PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g53670.3
Common NameLOC4330901, OJ1534_E09.1-1, Os02g0776700, OsJ_08581, OSJNBb0013K01.35-1, OSNPB_020776700
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 622aa    MW: 69141.4 Da    PI: 5.1686
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g53670.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-07504551347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                       +WT  E  +lvd+v+++G g W+ I r        Rt  ++k++w+++
  LOC_Os02g53670.3 504 AWTLCEVVKLVDGVARYGAGKWSEIRRLAFssySYRTSVDLKDKWRNL 551
                       7***************************999**99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.5E-12497555IPR009057Homeodomain-like
PROSITE profilePS5129413.899497556IPR017930Myb domain
SMARTSM007179.5E-7501554IPR001005SANT/Myb domain
CDDcd116602.26E-17503553No hitNo description
SuperFamilySSF466894.52E-14503556IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0031627Biological Processtelomeric loop formation
GO:0046686Biological Processresponse to cadmium ion
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MEVGGPQDAL DNRSDDNDFD KNDNSDPVVY QLVRVEGDGT LIPATEDEVL QFETFLHDEK  60
VDDDLPSIDD VTHVEEYFTN DCIVKKPEFE EGPSKLDTAD VQTQKLDAGL EEDRLCTLND  120
SIVLPSNCSA VHDQQLDKLN TEQGANIIAQ QDNASTETTK STVLNDLSSD KEKADACSKP  180
VNEASAGQSV SGVTSSVPDF SILKGEVCLD DLTMRELQEA FRATFGRQTT VKDKLWLKRR  240
IAMGLINSCD VPSSGCVVRD YKVIAMGAKQ EIPVVEAIPK MELEANLVRD QVMNPGHERD  300
LPSSLSYHSE EQQRSSKRLK RVPTDNDEPQ VTIFAEQGTT KRIRKPTKRY IEELSDIDTH  360
ESTGRLSSPG KRHVYDEVLL RPRIAPLHEV DSLSTAYPTR EDTLGGCSVH VPYVSRMRRG  420
RPRSNFIPFL DPEPSVECTE APAADVVNLE KEGERKNHKN TGKKGVHVET SCEKDVQGLQ  480
DKDFCDSDDN PKTKRGGKRK HHRAWTLCEV VKLVDGVARY GAGKWSEIRR LAFSSYSYRT  540
SVDLKDKWRN LIRASQTQLS TENDGVCPRK SNPSAIPIPV SILLRVKKLA EMQSQAGDVR  600
VPIKFSGQST TVVQGKVSGF L*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.140080.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329804180.0
Expression AtlasQ6YZ61-
Function -- GeneRIF ? help Back to Top
  1. Mutation of MYB1 led to an increase in phosphate (Pi) uptake and accumulation, accompanied by altered expression of a subset of Pi transporters and several genes involved in Pi starvation signaling. Furthermore, MYB1 affected the elongation of the primary root in a Pi-dependent manner and lateral roots in a Pi-independent manner.
    [PMID: 28549191]
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g53670.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g53670
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0703940.0AK070394.1 Oryza sativa Japonica Group cDNA clone:J023049B09, full insert sequence.
GenBankFJ9402130.0FJ940213.1 Oryza sativa Japonica Group clone KCS120F03 Myb transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625825.10.0uncharacterized protein LOC4330901 isoform X2
TrEMBLQ6YZ610.0Q6YZ61_ORYSJ; MYB transcription factor-like
STRINGOS02T0776700-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.14e-80TRF-like 6
Publications ? help Back to Top
  1. Gu M, et al.
    Maintenance of phosphate homeostasis and root development are coordinately regulated by MYB1, an R2R3-type MYB transcription factor in rice.
    J. Exp. Bot., 2017. 68(13): p. 3603-3615
    [PMID:28549191]