PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g53670.1 | ||||||||
Common Name | LOC4330901, OJ1534_E09.1-1, Os02g0776700, OsJ_08581, OSJNBb0013K01.35-1, OSNPB_020776700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 623aa MW: 69269.5 Da PI: 5.1686 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.5 | 1.3e-07 | 505 | 552 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +WT E +lvd+v+++G g W+ I r Rt ++k++w+++ LOC_Os02g53670.1 505 AWTLCEVVKLVDGVARYGAGKWSEIRRLAFssySYRTSVDLKDKWRNL 552 7***************************999**99***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.5E-12 | 498 | 556 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.899 | 498 | 557 | IPR017930 | Myb domain |
SMART | SM00717 | 9.5E-7 | 502 | 555 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.52E-14 | 504 | 557 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 2.23E-17 | 504 | 554 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0031627 | Biological Process | telomeric loop formation | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000783 | Cellular Component | nuclear telomere cap complex | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001004 | developmental stage | anther development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 623 aa Download sequence Send to blast |
MEVGGPQDAL DNRSDDNDFD KNDNSDPVVY QLVRVEGDGT LIPATEDEVL QFETFLHDEK 60 VDDDLPSIDD VTHVEEYFTN DCIVKKPEFE EGPSKLDTAD VQTQKLDAGL EEDRLCTLND 120 SIVLPSNCSA VHDQQLDKLN TEQGANIIAQ QDNASTETTK STVLNDLSSD KEKADACSKP 180 VNEASAGQSV SGVTSSVPDF SILKGEVCLD DLTMRELQEA FRATFGRQTT VKDKLWLKRR 240 IAMGLINSCD VPSSGCVVRD YKVIAMGAKQ EIPVVEAIPK MELEANLVRD QVMNPGHERD 300 LPSSLSYHSE EQQRSSKRLK RVPTDNDEPQ VTIFAEQGTT KRIRKPTKRY IEELSDIDTH 360 ESTGRLSSPG KRHVYDEVLL RPRIAPLHEV DSLSTAYPTR EDTLGGCSVH VPYVSRMRRG 420 RPRSNFIPFL DPEPSVECTE APAADVVNLE KEGERKNHQK NTGKKGVHVE TSCEKDVQGL 480 QDKDFCDSDD NPKTKRGGKR KHHRAWTLCE VVKLVDGVAR YGAGKWSEIR RLAFSSYSYR 540 TSVDLKDKWR NLIRASQTQL STENDGVCPR KSNPSAIPIP VSILLRVKKL AEMQSQAGDV 600 RVPIKFSGQS TTVVQGKVSG FL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.14008 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32980418 | 0.0 | ||||
Expression Atlas | Q6YZ61 | - |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g53670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g53670 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070394 | 0.0 | AK070394.1 Oryza sativa Japonica Group cDNA clone:J023049B09, full insert sequence. | |||
GenBank | FJ940213 | 0.0 | FJ940213.1 Oryza sativa Japonica Group clone KCS120F03 Myb transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625819.1 | 0.0 | uncharacterized protein LOC4330901 isoform X1 | ||||
Refseq | XP_015625820.1 | 0.0 | uncharacterized protein LOC4330901 isoform X1 | ||||
Refseq | XP_015625822.1 | 0.0 | uncharacterized protein LOC4330901 isoform X1 | ||||
Refseq | XP_015625823.1 | 0.0 | uncharacterized protein LOC4330901 isoform X1 | ||||
Refseq | XP_015625824.1 | 0.0 | uncharacterized protein LOC4330901 isoform X1 | ||||
TrEMBL | Q6YZ61 | 0.0 | Q6YZ61_ORYSJ; MYB transcription factor-like | ||||
STRING | OS02T0776700-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6966 | 33 | 41 | Representative plant | OGRP1645 | 15 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 7e-81 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g53670.1 |
Entrez Gene | 4330901 |
Publications ? help Back to Top | |||
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