PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g53150.1
Common NameOJ1353_F08.10, Os02g0771200, OsJ_08538, OSNPB_020771200
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GeBP
Protein Properties Length: 317aa    MW: 34457.8 Da    PI: 4.4881
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g53150.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57349.21.4e-15134225298
            DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                       +f+r+ws eDe+ +L +l   + ++g  +   +da++ ++ +s++ + + +++l  K+  LK++++   kk  +g+    sk hd+  ++lsk
  LOC_Os02g53150.1 134 AFHRIWSTEDEVRILEALAAHRREHG--SLPQTDALIATLAGSLDNTgYGRKELQGKVSTLKRRYESTAKK--KGDL--PSKGHDRRLYDLSK 220
                       699******************99999..678899**********8653899******************99..5554..5799********** PP

            DUF573  94 kiWgs 98 
                       ++Wgs
  LOC_Os02g53150.1 221 SVWGS 225
                       ***95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.0E-21135224IPR007592Protein of unknown function DUF573
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MAPKRPTPPP PPPPVASSEE TASGSDSDES EEEEEESPLA QPAPVVSNKG AESDSSGEEE  60
SEEEEEEDLV RSSATKSRDP PQENREEDDS SDEEEDESSE SEKAEAPPPP PPNPAPKQGA  120
EGNGPKVSSP KRQAFHRIWS TEDEVRILEA LAAHRREHGS LPQTDALIAT LAGSLDNTGY  180
GRKELQGKVS TLKRRYESTA KKKGDLPSKG HDRRLYDLSK SVWGSEAAAA AVNGTTTAPR  240
EFGEMCELYP HLAEEVKLLE AAHPGLFKRD FGKLDDDKAH ALDMKIKKQR IAEISVVLRR  300
GDLTKEVTKV LAELVE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.62280.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329768410.0
Expression AtlasQ6ZHH2-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g53150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g53150
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0668230.0AK066823.1 Oryza sativa Japonica Group cDNA clone:J013075K03, full insert sequence.
GenBankAP0040580.0AP004058.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1353_F08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627254.11e-143probable tyrosine-protein phosphatase DSP2
TrEMBLQ6ZHH20.0Q6ZHH2_ORYSJ; Os02g0771200 protein
STRINGOS02T0771200-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67292737
Representative plantOGRP1106545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44810.15e-09DNA-binding storekeeper protein-related transcriptional regulator