PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os02g53100.1

Common Name

WRKY32

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

WRKY

Protein Properties

Length: 605aa MW: 62940.3 Da PI: 4.7995

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os02g53100.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96	2.5e-30	340	399	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ LOC_Os02g53100.1 340 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 399 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-31	325	401	IPR003657	WRKY domain
SuperFamily	SSF118290	3.27E-27	333	401	IPR003657	WRKY domain
PROSITE profile	PS50811	28.529	335	401	IPR003657	WRKY domain
SMART	SM00774	1.4E-37	340	400	IPR003657	WRKY domain
Pfam	PF03106	1.1E-26	341	399	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 605 aa Download sequence Send to blast
MSSKKKRAAI DLSLEAERRR PEERGGGSDR EASDGAAAAA EEDGDVKQRE GPKEETGGEE 60 EKVVEVVVDQ GEDGSNEEIK YRTQQAEMIE EDKQPAAAAN VDDDGGDSDG VGASAEEKHM 120 VTEATGGEGD DGGDSRTPMA QDELSEMQEE MERMKEENRM LRRVVDKTVR DYYELQMKLA 180 AYQQQPAAAD EPKETEVFLS LGATAAASAG CGGGFPEAKS KEQAAWRRRS VGSDDSDCGK 240 EDLGLSLSLG ASSSYDDDQK AVEARPHDVD GAAAAAMIGG DGSRPAPRGY ALLESSKVQG 300 GAAPAAGELA AAGGITSQSV NPANRKTRVS VRVRCQGPTM NDGCQWRKYG QKVAKGNPCP 360 RAYYRCTVAP GCPVRKQVQR CLEDMSILVT TYEGTHNHPL PVGATAMAST TSAAATFMLL 420 SSTTSSSSVS DASAAPSSSY LSPYLLNSAS PLLMPGATGG GGGMQHLNLF GNSPSSSSLL 480 APQAPGSSKY PWSPNHPPLA GAGGNKRPFW SAGGDGDKPA PAALAENVGA VMSDPNKFSA 540 AIAAAINNFM GKDGESSSGK SSTFAWTRSM DCTATPASVP APARPRREPV HGPGPRRGEQ 600 AAKL*

Sequence ? help Back to Top

Protein Sequence Length: 605 aa Download sequence Send to blast

MSSKKKRAAI DLSLEAERRR PEERGGGSDR EASDGAAAAA EEDGDVKQRE GPKEETGGEE  60
EKVVEVVVDQ GEDGSNEEIK YRTQQAEMIE EDKQPAAAAN VDDDGGDSDG VGASAEEKHM  120
VTEATGGEGD DGGDSRTPMA QDELSEMQEE MERMKEENRM LRRVVDKTVR DYYELQMKLA  180
AYQQQPAAAD EPKETEVFLS LGATAAASAG CGGGFPEAKS KEQAAWRRRS VGSDDSDCGK  240
EDLGLSLSLG ASSSYDDDQK AVEARPHDVD GAAAAAMIGG DGSRPAPRGY ALLESSKVQG  300
GAAPAAGELA AAGGITSQSV NPANRKTRVS VRVRCQGPTM NDGCQWRKYG QKVAKGNPCP  360
RAYYRCTVAP GCPVRKQVQR CLEDMSILVT TYEGTHNHPL PVGATAMAST TSAAATFMLL  420
SSTTSSSSVS DASAAPSSSY LSPYLLNSAS PLLMPGATGG GGGMQHLNLF GNSPSSSSLL  480
APQAPGSSKY PWSPNHPPLA GAGGNKRPFW SAGGDGDKPA PAALAENVGA VMSDPNKFSA  540
AIAAAINNFM GKDGESSSGK SSTFAWTRSM DCTATPASVP APARPRREPV HGPGPRRGEQ  600
AAKL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	8e-22	327	403	1	76	WRKY transcription factor 1
Search in ModeBase

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	115448940	0.0
Expression Atlas	Q6IEP9	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os02g53100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os02g53100

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004058	0.0	AP004058.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1353_F08.
GenBank	AP004080	0.0	AP004080.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1079_F11.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	0.0	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015623937.2	0.0	probable WRKY transcription factor 47
TrEMBL	Q6IEP9	0.0	Q6IEP9_ORYSJ; WRKY transcription factor 32
STRING	ORUFI02G35580.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8022	34	46
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	6e-50	WRKY DNA-binding protein 9

Link Out ? help Back to Top
Phytozome	LOC_Os02g53100.1

Publications ? help Back to Top
Zhang ZL, et al. A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells. Plant Physiol., 2004. 134(4): p. 1500-13 [PMID:15047897]