PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os02g52950.1 | ||||||||
Common Name | LOC4330853, Os02g0768700, OSNPB_020768700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 295aa MW: 31156.3 Da PI: 10.5716 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 43.3 | 9.9e-14 | 94 | 182 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 +q+lw + De++lL G f+a+ g p d+ a+++ +++s+s ++ + + K++rLK K+ + + + +h++ + +l+ + LOC_Os02g52950.1 94 VQKLWGDADEVALLAGAAAFRARAGHVPRLpDMGALFDSIRGSLSPHIDQAKVYYKLKRLKGKYLHAAPG-------ASAGPHERRVRDLCAS 179 79************************77766**********************************99888.......6788999999999999 PP DUF573 95 iWg 97 +Wg LOC_Os02g52950.1 180 VWG 182 997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 7.4E-14 | 95 | 182 | IPR007592 | Protein of unknown function DUF573 |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 295 aa Download sequence Send to blast |
MPSKRPSQSA MDAGAAPASP SPPRSSKKRS SRPKPRAGDA ARHPAPNPSP PPAAAAPASS 60 RSRERERKRR QRGAFADPAA VTAPAAGGQH GGAVQKLWGD ADEVALLAGA AAFRARAGHV 120 PRLPDMGALF DSIRGSLSPH IDQAKVYYKL KRLKGKYLHA APGASAGPHE RRVRDLCASV 180 WGADLEPLAE GDDERAAAAA AAAAADQPRT VPDAAAMLPV LTEMLDEYWK TDGRALSSVS 240 LAKGLSLLGT EEARFIEGKW RRQLDSEIQT QMRRHDLAKE VYALLMDAIK ALGP* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 65 | 70 | ERKRRQ |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 156765849 | 0.0 | ||||
Expression Atlas | A0A0P0VQF4 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os02g52950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os02g52950 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP004080 | 0.0 | AP004080.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1079_F11. | |||
GenBank | AP004125 | 0.0 | AP004125.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1767_D02. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626514.1 | 0.0 | STOREKEEPER protein | ||||
TrEMBL | A0A0P0VQF4 | 0.0 | A0A0P0VQF4_ORYSJ; Os02g0768700 protein | ||||
TrEMBL | Q6ZGJ6 | 0.0 | Q6ZGJ6_ORYSJ; Uncharacterized protein | ||||
STRING | OS02T0768700-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2682 | 27 | 63 | Representative plant | OGRP13067 | 4 | 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os02g52950.1 |
Entrez Gene | 4330853 |