PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g52670.1 | ||||||||
Common Name | LOC4330829, Os02g0764700, OsJ_08495, OSNPB_020764700, P0539D10.19 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 25789 Da PI: 6.9863 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.2 | 5.7e-20 | 120 | 170 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GVr+++ +g+W+AeIrdp+ r +lg+f+tae+Aa+a++ a+++++g LOC_Os02g52670.1 120 SRYRGVRRRP-WGKWAAEIRDPR----RaVCKWLGTFDTAEDAARAYDVAALEFRG 170 79********.**********82....48*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.4E-12 | 120 | 170 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.92E-29 | 120 | 180 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-23 | 120 | 180 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.9E-35 | 121 | 184 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.895 | 121 | 178 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-30 | 121 | 179 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-13 | 122 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-13 | 160 | 180 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009038 | anatomy | palea | ||||
PO:0001048 | developmental stage | palea development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MVPRVERGGG GFHLPNSERE DSLFIRALIS VVSGDTTVPT LLPEPTMATV VAGAATCARC 60 GVDGCIGVDC EVVVLAAAAG SSCSDEEDEG ECTTGAVASG GVTGGVGKRR PRRRSGGEGS 120 RYRGVRRRPW GKWAAEIRDP RRAVCKWLGT FDTAEDAARA YDVAALEFRG QRAKLNFPAS 180 TAAQQPRPLL HHNLRENCGS NASSPVHAPE HARTAAAAKD QEIWDGLREI MMLDDGSFWS 240 MP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-21 | 116 | 178 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 108 | 113 | RRPRRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.54944 | 0.0 | panicle| root| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32992355 | 0.0 | ||||
Expression Atlas | Q6Z7P9 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g52670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g52670 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107146 | 0.0 | AK107146.1 Oryza sativa Japonica Group cDNA clone:002-124-D09, full insert sequence. | |||
GenBank | AP004817 | 0.0 | AP004817.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0539D10. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624274.1 | 1e-176 | ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | Q6Z7P9 | 1e-175 | Q6Z7P9_ORYSJ; AP2 domain-containing transcription factor-like | ||||
STRING | OS02T0764700-01 | 1e-176 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 2e-15 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g52670.1 |
Entrez Gene | 4330829 |