PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g52190.1
Common NameLOC4330791, OsJ_08458
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 335aa    MW: 35276.9 Da    PI: 6.7107
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g52190.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.84.4e-14136187155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +rr+h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++++k+L+
  LOC_Os02g52190.1 136 QRRNHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVAGAINFVKELE 187
                       79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.18E-15134191No hitNo description
SuperFamilySSF474591.57E-17134206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.885135186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-14136201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-11136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-10141192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MALEAVVFPQ EHLSCAAAMY AAPPSSLGCG VDMDEFEENG GVVLQEEAGV AVHGGGGGGA  60
GGMMSLWVNA ATCARSIAAS GAVEEFWDER QYPVSSPPAA PTPAASGGGG GHAKAAARRR  120
RRRPKVVKNK EEAESQRRNH IAVERNRRRQ MNEYLAVLRS LMPPSYAQRG DQASIVAGAI  180
NFVKELEQLL QSLEAQKRRA EHAPPAPPFA GFFTFPQYST TVGDNNAAGS GAADGEGGCG  240
ARPGAADIEV AMAESHANVR VLAPRRPRQL LRMVVALQCL GLTVLHLNVT TTADHLALYS  300
FSLKMEDECR LSSVDEIAGA VNQMVTKIAG ECIS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117122RRRRRR
2137147RNHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.553380.0flower| panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA3ABJ9
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g52190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g52190
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048140.0AP004814.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0471A11.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623907.10.0transcription factor bHLH94
TrEMBLA0A0E0NL790.0A0A0E0NL79_ORYRU; Uncharacterized protein
TrEMBLA3ABJ90.0A3ABJ9_ORYSJ; Uncharacterized protein
STRINGORUFI02G34810.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104622843
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.16e-53bHLH family protein