PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g51670.1 | ||||||||
Common Name | LOC4330752, OJ1288_G09.10, Os02g0752800, OSNPB_020752800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 339aa MW: 36300.5 Da PI: 8.098 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.7 | 4e-20 | 168 | 217 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++a+ +l+g LOC_Os02g51670.1 168 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDKAAFRLRG 217 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.91E-31 | 167 | 225 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.8E-32 | 168 | 226 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.4E-38 | 168 | 231 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-22 | 168 | 226 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.077 | 168 | 225 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-11 | 169 | 180 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-13 | 169 | 217 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-11 | 191 | 207 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MAAAIDMYKY NTSTHQIASS DQELMKALEP FIRSASSSSA SSPCHHYYSS SPSMSQDSYM 60 PTPSYPTSSI TTAAATTTSS FSQLPPLYSS QYHAASPAAS ATNGPMGLTH LGPAQIQQIQ 120 AQFLAQQQQQ RALAGAFLRP RGQPMKQSGS PPRAGPFAAV AGAAQSKLYR GVRQRHWGKW 180 VAEIRLPKNR TRLWLGTFDT AEDAALAYDK AAFRLRGDLA RLNFPTLRRG GAHLAGPLHA 240 SVDAKLTAIC QSLATSSSKN TPAESAASAA EPESPKCSAS TEGEDSVSAG SPPPPTPLSP 300 PVPEMEKLDF TEAPWDESET FHLRKYPSWE IDWDSILS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 164 | 225 | 1 | 63 | ATERF1 |
3gcc_A | 2e-21 | 164 | 225 | 1 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.28117 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6ZGQ0 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00026 | PBM | Transfer from AT1G78080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g51670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g51670 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK105877 | 0.0 | AK105877.1 Oryza sativa Japonica Group cDNA clone:001-204-C05, full insert sequence. | |||
GenBank | AK105991 | 0.0 | AK105991.1 Oryza sativa Japonica Group cDNA clone:001-205-H01, full insert sequence. | |||
GenBank | AP004119 | 0.0 | AP004119.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1288_G09. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625871.1 | 0.0 | ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A0E0NL30 | 0.0 | A0A0E0NL30_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q6ZGQ0 | 0.0 | Q6ZGQ0_ORYSJ; Os02g0752800 protein | ||||
STRING | ORUFI02G34460.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS02T0752800-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 1e-48 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g51670.1 |
Entrez Gene | 4330752 |