PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os02g51310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 260aa MW: 28105 Da PI: 12.046 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 41.5 | 4.9e-13 | 77 | 173 | 16 | 120 |
TCP 16 ggRdRR...vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..kaaksaakskksqk 102 g R RR Rls+++ + f+d+qd+LG+ ++sk ieWL+ +a a l + +a + ++s + s+++ + + a s ks LOC_Os02g51310.1 77 GVRARRtstARLSVPTSIAFYDIQDRLGVNRPSKSIEWLICAALVARLLLRPPQRRPAPHPrRPSSGQPSEEQARTRkaTVAVSPGKSG---- 165 6677773335*********************************9999999998777773332222222222222222111222222222.... PP TCP 103 saasalnlakesrakara 120 e+r k r+ LOC_Os02g51310.1 166 ----------EKRRKTRS 173 ..........22222222 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 20.405 | 63 | 126 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.8E-9 | 76 | 119 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 260 aa Download sequence Send to blast |
MRQRRHGRRG GKAAAGARGA KAASIKIEQT KPRRISQELA QASAMEEVVV GKERKRPRCA 60 LVGVGGHDSD VADEPGGVRA RRTSTARLSV PTSIAFYDIQ DRLGVNRPSK SIEWLICAAL 120 VARLLLRPPQ RRPAPHPRRP SSGQPSEEQA RTRKATVAVS PGKSGEKRRK TRSGCAARKA 180 ERIAKLRVWR EGWMPRREAS TSATSGGQSW IRKPSTPGSG DSCSCSDAKP GKRRWAEKAG 240 EVVAREADGA ERGGGGRRR* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.79459 | 3e-86 | callus| flower| leaf| panicle| root| stem |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os02g51310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os02g51310 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP005733 | 0.0 | AP005733.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0024K03. | |||
GenBank | AP005848 | 0.0 | AP005848.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0078N11. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A2X9L7 | 1e-124 | A2X9L7_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA06G04550.1 | 1e-114 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19965 | 8 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G53230.1 | 1e-10 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os02g51310.1 |