PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g51280.1 | ||||||||
Common Name | LOC4330722, Os02g0747400, OSJNBa0078N11.17, OSJNBb0024K03.29, OSNPB_020747400, TCP6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | TCP | ||||||||
Protein Properties | Length: 411aa MW: 41249.4 Da PI: 9.8129 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 130 | 2.3e-40 | 66 | 242 | 1 | 137 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 aa+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ LOC_Os02g51280.1 66 AAPKRSSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSAPahlr 158 689*******************************************************************99987888888888666668888 PP TCP 89 ................................kaaksaakskksqksaasalnlakesrakarar..are.rtrekmriknkln 137 ++++s + + +s + l+++ + +a a a +r+ r++++m+++++++ LOC_Os02g51280.1 159 alpspaaaarfgsradawdrvvslgfpsegpaSSSSSPSPLLLNFHSGSVGLDVQPSPSAAAAAAdlSRKrRWEQEMQQQQQQQ 242 899999999999999999999999999999964444444888888888888888885555444444666667777777777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.1E-44 | 72 | 242 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.861 | 73 | 127 | IPR017887 | Transcription factor TCP subgroup |
Gene3D | G3DSA:2.60.120.10 | 3.0E-4 | 233 | 256 | IPR014710 | RmlC-like jelly roll fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010029 | Biological Process | regulation of seed germination | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0005634 | Cellular Component | nucleus |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009047 | anatomy | stem | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MTMDVAGDAG GGRRPNFPLQ LLEKKEEQPC SSSAAGGGTG PSSAGGNGNN GSGPGGAGGE 60 MQLRKAAPKR SSTKDRHTKV EGRGRRIRMP ALCAARVFQL TRELGHKTDG ETIEWLLQQA 120 EPAVIAATGT GTIPANFTSL NISLRSSGSS LSAPAHLRAL PSPAAAARFG SRADAWDRVV 180 SLGFPSEGPA SSSSSPSPLL LNFHSGSVGL DVQPSPSAAA AAADLSRKRR WEQEMQQQQQ 240 QQQQQQQQQQ QQYQQQMAGY TQSQMPGTVW MVPSNSTQGG GPSGGGGGGG GGSGESIWTF 300 PQMSSAAAAA AVYRGSVPSG LHFMNFPAPM ALLPGQQLGL GPVGGGGGGG GGGEGHMGIL 360 AALNAYRTQA ATDAAGQQGG GGGGGGSSQQ QHGGGGGGGE RHQSISTSDS * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 282 | 292 | SGGGGGGGGGS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.47948 | 0.0 | flower| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115448670 | 0.0 | ||||
Expression Atlas | Q6YUX6 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the vascular tissues of the embryo (PubMed:17953649). Expressed in young proliferating tissues (PubMed:21668538). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00396 | DAP | Transfer from AT3G47620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g51280.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g51280 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005733 | 0.0 | AP005733.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0024K03. | |||
GenBank | AP005848 | 0.0 | AP005848.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0078N11. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624016.1 | 0.0 | transcription factor TCP14 | ||||
Swissprot | Q93Z00 | 1e-56 | TCP14_ARATH; Transcription factor TCP14 | ||||
TrEMBL | Q6YUX6 | 0.0 | Q6YUX6_ORYSJ; Os02g0747400 protein | ||||
STRING | OS02T0747400-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3744 | 34 | 79 | Representative plant | OGRP2699 | 12 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69690.1 | 1e-44 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g51280.1 |
Entrez Gene | 4330722 |
Publications ? help Back to Top | |||
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