PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g50630.1
Common NameLOC4330674, Os02g0739700, OsJ_08321, OSNPB_020739700, P0684F11.26
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family E2F/DP
Protein Properties Length: 442aa    MW: 48540.1 Da    PI: 9.3646
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g50630.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP72.73.9e-2354119171
           E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                       rk+ksL+ll+++f++l+++ + + + l+++a++L    v  +rRRiYDi+NVLe+++++ +k+kn+++w+g
  LOC_Os02g50630.1  54 RKQKSLGLLCSNFVALYNRDDVESIGLDDAARRL---GV--ERRRIYDIVNVLESVGILVRKAKNRYSWIG 119
                       79*****************999************...**..****************************98 PP
2E2F_TDP75.84.5e-24199279171
           E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                       rkeksL+lltq+f+kl+ + e ++++l+e+ak L+ e     ++++k+RR+YDi+NVL++ln i+k     ++k+++rw g
  LOC_Os02g50630.1 199 RKEKSLGLLTQNFVKLFLTMEVDTISLDEAAKLLLGEghaenSMRTKVRRLYDIANVLSSLNFIDKiqqadSRKPAFRWLG 279
                       79********************************************************************99*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-2550120IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.04E-1653118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.4E-2954119IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.5E-2055119IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.8E-22196280IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.2E-30199279IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.1E-19200279IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.03E-12201279IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009072anatomyplant ovary
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MATAAVMAAV PSSSPADAAE AVVMTEAVPS LPQRQQPVFV EGRGGKLRDH AYSRKQKSLG  60
LLCSNFVALY NRDDVESIGL DDAARRLGVE RRRIYDIVNV LESVGILVRK AKNRYSWIGF  120
GGVPMALREL KERALREKSG LAPLPVEEPS AAIMSDDEDE DKMGDADGDT ESEKLSQPVD  180
NPSDNKPGAP RCRLRSDHRK EKSLGLLTQN FVKLFLTMEV DTISLDEAAK LLLGEGHAEN  240
SMRTKVRRLY DIANVLSSLN FIDKIQQADS RKPAFRWLGS AGKPKAENGV TIAVPPPGKT  300
ISNKRAFGTE LTNIDINRSR LDSTIPKKAK LTLSGGEILK NCKLSVQKQL GQGSKGGFVY  360
GPFHPAGARK QELDNGNKGH TDNVQNWESL AASFRPQYQN QALGDLFAHY VEAWKSWYSE  420
FAQGSSMMQQ HFGMPVINQF L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A2e-36532713228Transcription factor E2F8
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.473760.0callus| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379882000.0
Expression AtlasQ6Z5N3-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g50630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g50630
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1115370.0AK111537.1 Oryza sativa Japonica Group cDNA clone:J013041C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626334.10.0E2F transcription factor-like E2FE
TrEMBLQ6Z5N30.0Q6Z5N3_ORYSJ; Os02g0739700 protein
STRINGOS02T0739700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Representative plantOGRP24741634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-103DP-E2F-like 1