PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g49700.3 | ||||||||
Common Name | HOX16, LOC4330610, Os02g0729700, OsJ_007974, OSJNBa0072H09.24, P0617A09.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 299aa MW: 33320.3 Da PI: 4.3607 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.8 | 1.2e-20 | 32 | 85 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe+++++ e+++eLA+klgL+ rqV vWFqNrRa++k LOC_Os02g49700.3 32 KKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWK 85 5678*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 132.9 | 1.1e-42 | 31 | 123 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eqv+lLE+sFeee+kLeperK+elar+LglqprqvavWFqnrRAR+ktkqlE+d+++Lk+++dal++++++L +++++L++++++ LOC_Os02g49700.3 31 EKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHRLHSQVMS 123 69**************************************************************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 18.22 | 27 | 87 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.49E-20 | 27 | 89 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.0E-20 | 30 | 91 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.3E-18 | 32 | 85 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.91E-20 | 32 | 88 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-22 | 33 | 94 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.8E-6 | 58 | 67 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 62 | 85 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.8E-6 | 67 | 83 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.5E-18 | 87 | 129 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001558 | Biological Process | regulation of cell growth | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MEEGGRGVKR PFFTTPDELL EEEYYDEQLP EKKRRLTPEQ VHLLERSFEE ENKLEPERKT 60 ELARKLGLQP RQVAVWFQNR RARWKTKQLE RDFDRLKASF DALRADHDAL LQDNHRLHSQ 120 VMSLTEKLQE KETTTEGSAG AAVDVPGLPA AADVKVAVPD AEEPALEEAA AAFEEQQEQQ 180 VKAEDRLSTG SGGSAVVDTD AQLVVGCGRQ HLAAVDSSVE SYFPGGDEYH DCVMGPMDHA 240 AGGIQSEEDD GAGSDEGCSY YADDAGVLFA DHGHHHHHQH ADDDEEDGQQ ISCWWMWN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 87 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.57545 | 0.0 | callus| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116641660 | 0.0 | ||||
Expression Atlas | Q6YWR4 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00323 | DAP | Transfer from AT3G01470 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g49700.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g49700 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK119592 | 0.0 | AK119592.1 Oryza sativa Japonica Group cDNA clone:002-117-D05, full insert sequence. | |||
GenBank | CT830627 | 0.0 | CT830627.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI205P01, full insert sequence. | |||
GenBank | CT833153 | 0.0 | CT833153.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI226L23, full insert sequence. | |||
GenBank | CT834700 | 0.0 | CT834700.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI224F24, full insert sequence. | |||
GenBank | CU405960 | 0.0 | CU405960.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C104H10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626254.1 | 0.0 | homeobox-leucine zipper protein HOX16 isoform X2 | ||||
Swissprot | A2X980 | 0.0 | HOX16_ORYSI; Homeobox-leucine zipper protein HOX16 | ||||
Swissprot | Q6YWR4 | 0.0 | HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16 | ||||
TrEMBL | A0A0E0NKG9 | 0.0 | A0A0E0NKG9_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1P3W0 | 0.0 | I1P3W0_ORYGL; Uncharacterized protein | ||||
STRING | ORUFI02G32840.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS02T0729700-01 | 0.0 | (Oryza sativa) | ||||
STRING | ORGLA02G0266600.1 | 0.0 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 1e-54 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g49700.3 |
Entrez Gene | 4330610 |
Publications ? help Back to Top | |||
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