PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g49480.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 388aa    MW: 42474.3 Da    PI: 8.483
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g49480.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH542.9e-17190239255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r +h++ E+rRR +iN+++e LrellP+     ++K +Ka+ L +++eYI+ Lq
  LOC_Os02g49480.1 190 RSKHSATEQRRRTKINDRLEILRELLPHT----DQKRDKASFLSEVIEYIRFLQ 239
                       889*************************8....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-18186248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-22187251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.768188238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.78E-16190243No hitNo description
PfamPF000109.1E-15190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-12194244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MQLFQGEEPA HDFLSLRAGG GSSSPPFQHR EEQHSSHSSR GYGMEIRRSL RPLDLAKQRG  60
RSSGNGTAAG SAVDGASPAG SDSEEHVLPG GVGTFSIRHA SGTPSREEAG SHGGVRRSAF  120
AFAPALHGAR MENAHETGGR SGSRAHRAPS TMWQDSAIDQ RSIGQTPYEA TRAEGRSSAS  180
SADQGPSTPR SKHSATEQRR RTKINDRLEI LRELLPHTDQ KRDKASFLSE VIEYIRFLQE  240
KVQKYEEADP ERNHEDSKSM PWAKVYYRSC WRNTKNTSQV QGEDLSPSTQ DMNNEQYGPK  300
HISAAQPALF NTQSVTSTTT SSSHMATGTP QNLEKNSTPS NQPPWLSMST MRQESEPGNK  360
MPNKHEKQTL HDENHSISSA YSQGSVP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.525920.0callus| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329782460.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g49480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g49480
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682280.0AK068228.1 Oryza sativa Japonica Group cDNA clone:J013148L19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627558.10.0transcription factor BIM2
RefseqXP_015627559.10.0transcription factor BIM2
RefseqXP_015627560.10.0transcription factor BIM2
TrEMBLI1P3U10.0I1P3U1_ORYGL; Uncharacterized protein
STRINGORGLA02G0264700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Representative plantOGRP13601747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.32e-29bHLH family protein