PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g49230.2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family CO-like
Protein Properties Length: 481aa    MW: 52426.5 Da    PI: 6.0945
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g49230.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.81.6e-0677118540
          zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 
                        C+ + e++   +C+++   lC +C  + H+       Ht++
  LOC_Os02g49230.2  77 LCDFCREQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 118
                       7*****************************657888888876 PP
2zf-B_box21.93.6e-07120162541
          zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 
                        C+++  +++   C + ++ lC++C  ++H g       H++++
  LOC_Os02g49230.2 120 LCDRCVGQPAAVRCLEENTSLCQNCDWNGH-GaassaagHKRQT 162
                       7*****************************.5588889998876 PP
3CCT64.24e-22423466144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       R++al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  LOC_Os02g49230.2 423 RDNALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 466
                       899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.3E-1273120IPR000315B-box-type zinc finger
PROSITE profilePS5011910.28173120IPR000315B-box-type zinc finger
CDDcd000211.23E-777120No hitNo description
PROSITE profilePS501199.058116163IPR000315B-box-type zinc finger
CDDcd000219.03E-6120163No hitNo description
SMARTSM003360.24121163IPR000315B-box-type zinc finger
PROSITE profilePS5101715.408423465IPR010402CCT domain
PfamPF062038.8E-17423465IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MLISHPMLSN SSGSFHGLYQ YTYISPTLTK EWKQTHHYPG RIPLNSTVEQ KARKVAVLVA  60
LSASGSAPVL YRTMDALCDF CREQRSMVYC RSDAASLCLS CDRNVHSANA LSRRHTRTLL  120
CDRCVGQPAA VRCLEENTSL CQNCDWNGHG AASSAAGHKR QTINCYSGCP SSAELSRIWS  180
FSMDIPTVAA EPNCEEGINM MSINDNDVNN HCGAPEDGRL LDIASTALMS DLPTGDKFKP  240
LIGSSSGDGM NLLPLNSDQP AEPVSTTPKA PCVTDKDMFN DGSVYGDFCV DDADLTFENY  300
EELFGTSHVQ TEQLFDDAGI DSYFEMKDVP ADESNEQPKP VQPECSNVAS VDSGMSNPAA  360
RADSSHCIPG RQAISNISLS FSGLTGESSA GYFQDCGVSS MILMGEPPWH PPGPESSSAG  420
GSRDNALTRY KEKKKRRKFD KKIRYASRKA RADVRKRVKG RFVKAGEAYD YDPLSQTRSY  480
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1432436KKKRR
2432437KKKRRK
3433437KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.34000.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166324750.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g49230.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g49230
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8322790.0CT832279.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA228H16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878658.10.0zinc finger protein CONSTANS-LIKE 9 isoform X3
SwissprotQ9SSE51e-125COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A0E0NKB40.0A0A0E0NKB4_ORYRU; Uncharacterized protein
STRINGOBART02G30740.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Representative plantOGRP13751334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.43e-92CONSTANS-like 9