PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g48060.1
Common NameLOC4330488, Os02g0710300, OSNPB_020710300
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 301aa    MW: 30847.7 Da    PI: 5.9077
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g48060.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-09214255955
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        ++RR+ri +++  L+el+P+      +K++ +++LekA+ Y+k Lq
  LOC_Os02g48060.1 214 AKNRRERISERLRILQELVPNG-----TKVDLVTMLEKAISYVKFLQ 255
                       69******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.091205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-11206263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-13207265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.28E-12207259No hitNo description
SMARTSM003532.0E-11211260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6214255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0048766Biological Processroot hair initiation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MRMALVRERA MVYGGGCDAE AFGGGFESSQ MGYGHDALLD IDAAALFGGY EAAASAGCAL  60
VQDGAAGWAG AGASSSVLAF DRAAQAEEAE CDAWIEAMDQ SYGAGGEAAP YRSTTAVAFD  120
AATGCFSLTE RATGGGGGAG GRQFGLLFPS TSGGGVSPER AAPAPAPRGS QKRAHAESSQ  180
AMSPSKKQCG AGRKAGKAKS APTTPTKDPQ SLAAKNRRER ISERLRILQE LVPNGTKVDL  240
VTMLEKAISY VKFLQLQVKV LATDEFWPAQ GGKAPEISQV KEALDAILSS SSPLMGQLMN  300
*
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329948710.0
Expression AtlasQ0DY80-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g48060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g48060
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096620.0AK109662.1 Oryza sativa Japonica Group cDNA clone:002-143-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624282.10.0putative transcription factor bHLH086
TrEMBLQ0DY800.0Q0DY80_ORYSJ; Os02g0710300 protein
STRINGOS02T0710300-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Representative plantOGRP35321326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.13e-40ROOT HAIR DEFECTIVE6