PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g47810.1 | ||||||||
Common Name | OsJ_35953 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | Dof | ||||||||
Protein Properties | Length: 311aa MW: 32251.8 Da PI: 8.2858 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.9 | 1.3e-39 | 59 | 118 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++ lkcprC+st+tkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk++ LOC_Os02g47810.1 59 HDQPLKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGSLRNVPVGGGCRKNKRA 118 7899*****************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-32 | 58 | 117 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.1E-33 | 60 | 117 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.227 | 63 | 117 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 65 | 101 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MMAGAPPMHI CMDSDWLKGI VPEEHGMGSS SPSAELIACP RAPMQAAAAA ADRRLRPQHD 60 QPLKCPRCES THTKFCYYNN YSLSQPRYFC KTCRRYWTKG GSLRNVPVGG GCRKNKRAPP 120 KKAAAHAQPA VAVAAALQGR HMETGLHLSF SGMQHHLAPP PPAAATAADP LCSLGLFDWK 180 QYDPVFAGSG GGGSPVAALE SAGGSEAQFM GAGMMGIGGG GVAEYHALSA LRFAAGLGDH 240 LALPFGAVRA EHDAVEVKPV AAERLLSLEW CGEASRTAAP ESSISSLGGL GLWSGMIGGG 300 HHHHGSSAAI * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.46084 | 0.0 | callus| leaf| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | B9GCY5 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00580 | DAP | Transfer from AT5G62940 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g47810.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g47810 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF480496 | 0.0 | AF480496.1 Oryza sativa clone BAC 49D11, complete sequence. | |||
GenBank | AP005323 | 0.0 | AP005323.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0680A05. | |||
GenBank | AP005844 | 0.0 | AP005844.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0060O16. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623280.1 | 0.0 | dof zinc finger protein DOF3.1 | ||||
TrEMBL | A0A0E0NJV8 | 0.0 | A0A0E0NJV8_ORYRU; Uncharacterized protein | ||||
TrEMBL | B9GCY5 | 0.0 | B9GCY5_ORYSJ; Uncharacterized protein | ||||
STRING | ORUFI02G31200.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4704 | 32 | 63 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62940.1 | 9e-36 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g47810.1 |