PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g47744.4 | ||||||||
Common Name | 49D11.24, LOC4330464, Os02g0706400, OsJ_08088, OSNPB_020706400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 102aa MW: 11353.2 Da PI: 10.0986 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.6 | 1.2e-07 | 4 | 51 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WTt + + +a + + + +W +ar +g g++ ++k ++ k+ LOC_Os02g47744.4 4 SWTTKQNKVFERALAIYDRDtpdRWQNVARAVGGGKSVDDVKRHYEKL 51 7*****************99*************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 5.8E-6 | 1 | 54 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 11.481 | 1 | 56 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 1.52E-11 | 3 | 59 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00106 | 4 | 52 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MSSSWTTKQN KVFERALAIY DRDTPDRWQN VARAVGGGKS VDDVKRHYEK LIKDVDRIDS 60 TGGHQGSHYN SSNASSSSSS SSSNSRGSAN EDQRRRYHNF Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-20 | 4 | 60 | 10 | 65 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.48485 | 1e-173 | callus| flower| leaf| panicle| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37991009 | 1e-173 | ||||
Expression Atlas | Q8S3Q7 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g47744.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g47744 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121386 | 1e-171 | AK121386.1 Oryza sativa Japonica Group cDNA clone:J023127K17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627086.1 | 3e-68 | protein RADIALIS-like 3 isoform X2 | ||||
Refseq | XP_015627089.1 | 3e-68 | protein RADIALIS-like 3 isoform X2 | ||||
Refseq | XP_025878627.1 | 3e-68 | protein RADIALIS-like 3 isoform X2 | ||||
Refseq | XP_025878628.1 | 3e-68 | protein RADIALIS-like 3 isoform X2 | ||||
Refseq | XP_025878629.1 | 3e-68 | protein RADIALIS-like 3 isoform X2 | ||||
Refseq | XP_025878630.1 | 3e-68 | protein RADIALIS-like 3 isoform X2 | ||||
Refseq | XP_025878631.1 | 3e-68 | protein RADIALIS-like 3 isoform X2 | ||||
Swissprot | Q1A173 | 1e-22 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
Swissprot | Q6NNN0 | 7e-23 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | Q8S3Q7 | 8e-67 | Q8S3Q7_ORYSJ; Os02g0706400 protein | ||||
STRING | OS02T0706400-01 | 1e-67 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 7e-24 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g47744.4 |
Entrez Gene | 4330464 |
Publications ? help Back to Top | |||
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