PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g47660.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 362aa    MW: 38638.6 Da    PI: 7.3379
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g47660.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.1e-09174221455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR+ri +++  L+el+P +    +k   Ka +L + ++Y++sLq
  LOC_Os02g47660.1 174 SHSLAERVRRERISERMRYLQELVPGC----NKVTGKAGMLDEIINYVQSLQ 221
                       8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.82E-10168225No hitNo description
SuperFamilySSF474599.95E-17168237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485170220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16170232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-6174221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-9176226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAQCGGGDVS RHRKGHLDTV ESLCQGLLDD VMLDDDKCRA MFGYLQEWQD LASMCYGSLG  60
GEPPLAPEAS NGSGSSGGGG SFRKRRPDDA KGESNSICKR QRGKQQQQQQ PCHPDQMAAA  120
VGKGRPERAR PGAKKKAEVA SPKDSPATSA STVTAGQKTD YIHVRARRGQ ATDSHSLAER  180
VRRERISERM RYLQELVPGC NKVTGKAGML DEIINYVQSL QKQVEFLSMK IAASNPVVNF  240
NIVEDLFGRQ LSQAACNPAA LPAMALPMAQ VEPSCLQMSP LQQMQTSAGS SGYGLEMVVS  300
NQYSPPGGPM SVPAGASVEP CLNVNGAAGW DIGSHGLFSG FDAPFQSVQS DCLLDNLKME  360
M*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.77511e-152callus| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329922471e-152
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g47660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g47660
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1191830.0AK119183.1 Oryza sativa Japonica Group cDNA clone:001-038-D03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627481.10.0transcription factor bHLH63
TrEMBLA0A0D3F9G40.0A0A0D3F9G4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GBW20.0A0A0E0GBW2_ORYNI; Uncharacterized protein
STRINGONIVA02G32260.10.0(Oryza nivara)
STRINGOBART02G29490.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82523749
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.16e-36cryptochrome-interacting basic-helix-loop-helix 1