PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g46560.1
Common NameLOC9267196, OJ1148_D05.9, Os02g0691500, OsJ_07997, OSNPB_020691500
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 374aa    MW: 39563.6 Da    PI: 6.2832
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g46560.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.62.6e-1488139155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  LOC_Os02g46560.1  88 QRMTHIAVERNRRRQMNEYLAILRSLMPEP---YVQRGDQASIVGGAIEFVKELE 139
                       79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.91E-1486143No hitNo description
SuperFamilySSF474592.22E-1786156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.2587138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-1488152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-1188139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-1193144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MSTLVDALCA PCSDTALIYD TFNASAAASF LFDNAAAFCD ADILGATATG EKEATSSAAA  60
AAAEAAPPRK KRRRRAKSCK SREETETQRM THIAVERNRR RQMNEYLAIL RSLMPEPYVQ  120
RGDQASIVGG AIEFVKELEQ QLQSLEAQKR TLLPHHKARC DDATPMHNAS GSNVGAGGCM  180
EPTTTTSNCS SSVTEDAPSA DAPPFAQFFA YPQYVWCHSP RDSTTTTTAA SASASASASS  240
SSPATVAAAL QSEHRSGLAD IEVSLVETHA SVRVMSPRRP GQLLKMIAGL QALRLTVLHL  300
NVTTLDSLVL YTLSVKVEEG CSLTTVDDIA AAVHHVLCIV DAEAAASEHL LAAGQLATTA  360
TAVAKRELAT YMY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16874RKKRRRR
26974KKRRRR
38899RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.511090.0callus| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329707130.0
Expression AtlasQ6ZGS3-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g46560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g46560
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0606950.0AK060695.1 Oryza sativa Japonica Group cDNA clone:001-030-D07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623756.10.0transcription factor bHLH96
TrEMBLQ6ZGS30.0Q6ZGS3_ORYSJ; Os02g0691500 protein
STRINGOS02T0691500-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.17e-58bHLH family protein