PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g45570.1 | ||||||||
Common Name | GRF10, LOC4330314, Os02g0678800, OSJNBb0005A04.34, P0663F07.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GRF | ||||||||
Protein Properties | Length: 212aa MW: 22310.3 Da PI: 9.5815 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 80.2 | 1.9e-25 | 135 | 179 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 +++pgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr rsrk++e+ LOC_Os02g45570.1 135 EPDPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPVEA 179 699***************************************997 PP | |||||||
2 | QLQ | 52.3 | 1.7e-18 | 68 | 103 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 a+T +Q q+L++Q+l+y+y+aa++PvP +L+++i+k LOC_Os02g45570.1 68 ALTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWK 103 79*********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.8E-5 | 67 | 103 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.225 | 68 | 103 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.7E-11 | 68 | 102 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.548 | 135 | 179 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.8E-21 | 136 | 178 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MDEEKEADSP QPPSKLPRLS GADPNAGVVT MAAPPPPVGL GLGLGLGGDS RGERDVEASA 60 AAAHKATALT FMQQQELEHQ VLIYRYFAAG APVPVHLVLP IWKSVASSSF GPHRFPSLAV 120 MGLGNLCFDY RSSMEPDPGR CRRTDGKKWR CSRDVVPGHK YCERHVHRGR GRSRKPVEAS 180 AAATPANNGG GGGIVFSPTS VLLAHGTARA T* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.47323 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6EPP9 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g45570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g45570 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108170 | 0.0 | AK108170.1 Oryza sativa Japonica Group cDNA clone:002-139-H11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624931.1 | 1e-154 | growth-regulating factor 10 isoform X1 | ||||
Swissprot | Q6EPP9 | 1e-155 | GRF10_ORYSJ; Growth-regulating factor 10 | ||||
TrEMBL | B9VHC3 | 1e-150 | B9VHC3_ORYSI; Growth-regulating factor 10 | ||||
STRING | OS02T0678800-01 | 1e-153 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6221 | 30 | 51 | Representative plant | OGRP460 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36400.1 | 1e-35 | growth-regulating factor 3 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g45570.1 |
Entrez Gene | 4330314 |
Publications ? help Back to Top | |||
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