PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g45480.3
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 274aa    MW: 29236.1 Da    PI: 8.707
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g45480.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.1e-07112133426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       ++Cr+f++ G C+yG++C++ H+
  LOC_Os02g45480.3 112 RPCRYFLA-GDCSYGEKCRYPHS 133
                       79******.***********887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.8262854IPR000571Zinc finger, CCCH-type
SMARTSM003560.572953IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315108135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.16E-6109133IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012110134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5112133IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4112133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.101.8E-11137208IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003207.3E-6139178IPR001680WD40 repeat
SuperFamilySSF509783.66E-11141241IPR017986WD40-repeat-containing domain
PfamPF004006.8E-6143178IPR001680WD40 repeat
PROSITE profilePS5008214.118146187IPR001680WD40 repeat
PROSITE profilePS5029413146187IPR017986WD40-repeat-containing domain
PROSITE patternPS006780165179IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MDIETDGRFG NKRVHHRLGP ANGAASSSTS GKVCIHWRAG RCNRFPCPYL HSELPEATAK  60
RPSQSGGGGN VWRNPHSGGG GGRGAGGAGG PNKWGRGPGG ADGGPRHKVP DRPCRYFLAG  120
DCSYGEKCRY PHSYSMSDSI TMLTPLQGHE KVVTGIALPA GSDKLYSGSK DGTVRMWDCQ  180
TGQCAGVINM GREIGCMISE GPWLFVGIPD AVKVGRLDLR FVTLLQHYWC NGVHVCVYLP  240
DLLVLGIGLE YANTSGNEPY WANGASLCTR CWK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.231230.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329875330.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g45480.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g45480
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1023240.0AK102324.1 Oryza sativa Japonica Group cDNA clone:J033090J15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627227.11e-155zinc finger CCCH domain-containing protein 17
SwissprotQ0DYP51e-156C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLA0A0E0NJ681e-154A0A0E0NJ68_ORYRU; Uncharacterized protein
STRINGORUFI02G29260.11e-155(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.13e-61zinc finger WD40 repeat protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]