PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g45250.1 | ||||||||
Common Name | GL2-5, LOC4330297, Os02g0674800, OsJ_07908, P0657H12.28, ROC5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 805aa MW: 86047.2 Da PI: 5.4935 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.6 | 3.3e-21 | 99 | 154 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r+eL+++l+L+ rqVk+WFqNrR+++k LOC_Os02g45250.1 99 KKRYHRHTPQQIQELEALFKECPHPDEKQRAELSRRLSLDARQVKFWFQNRRTQMK 154 678899***********************************************999 PP | |||||||
2 | START | 187.1 | 8.9e-59 | 314 | 546 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHH.HHHHHHCCCGGCT-TT-S.... CS START 1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvla.llveellddkeqWdetla.... 77 ela +a++elvk+a+ ++p+Wv e +n +e+l +f + + + +ea+r+sg+v+ + lve+l+d + +W+ ++ LOC_Os02g45250.1 314 ELAISAMDELVKMAQMDDPLWVPALpgspskEVLNFEEYLHSFLPCIGmkpagYVSEASRESGLVIIDNSlALVETLMDER-RWSDMFScmia 405 57889*****************99978888888888888888888877*****************9876658999999999.*********** PP EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE..-TTS--....-TTSEE-EESSEEEEEEEEC CS START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd..seqkppe...sssvvRaellpSgiliepks 158 ka++le +s+g gal lm+aelq+lsplvp R+++f+R+++ql +g w++vdvS+d ++++++ + + v++++ pSg+++++++ LOC_Os02g45250.1 406 KATVLEEVSTGiagsrnGALLLMKAELQVLSPLVPiREVTFLRFCKQLAEGAWAVVDVSIDglVRDHNSGtapTGGNVKCRRVPSGCVMQDTP 498 ************************************************************96556666667678899**************** PP TCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 159 nghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ng++kvtwveh++++++++h+l+r+l++sgla+ga++w+atlqrqce+ LOC_Os02g45250.1 499 NGYCKVTWVEHTEYDEASVHQLYRPLLRSGLAFGARRWLATLQRQCEC 546 **********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-22 | 83 | 150 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.68E-21 | 89 | 156 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.123 | 96 | 156 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-19 | 97 | 160 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.35E-19 | 98 | 156 | No hit | No description |
Pfam | PF00046 | 9.5E-19 | 99 | 154 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 131 | 154 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 45.039 | 305 | 549 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.91E-32 | 308 | 546 | No hit | No description |
CDD | cd08875 | 1.23E-113 | 309 | 545 | No hit | No description |
SMART | SM00234 | 1.5E-47 | 314 | 546 | IPR002913 | START domain |
Pfam | PF01852 | 3.7E-51 | 315 | 546 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.41E-21 | 567 | 770 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009827 | Biological Process | plant-type cell wall modification | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0043481 | Biological Process | anthocyanin accumulation in tissues in response to UV light | ||||
GO:0048765 | Biological Process | root hair cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001004 | developmental stage | anther development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 805 aa Download sequence Send to blast |
MSFGGLFDGG GGGGMQFPFA SGFASSPALS LALDNAGGGI GGRMLGGGAG AGSSAGGAMT 60 RDTEAENDSR SGSDHLDAIS AAGEDDVEDA EPSNSRKRKK RYHRHTPQQI QELEALFKEC 120 PHPDEKQRAE LSRRLSLDAR QVKFWFQNRR TQMKTQLERH ENALLKQEND KLRAENMTIR 180 EAMRSPMCGS CGSPAMLGEV SLEEQHLRIE NARLKDELNR VCALATKFLG KPISLLSPPP 240 LLQPHLSLPM PNSSLELAIG GIGGLGSLGT LPGCMNEFAG GVSSPMGTVI TPARATGAAI 300 PSLVGNIDRS VFLELAISAM DELVKMAQMD DPLWVPALPG SPSKEVLNFE EYLHSFLPCI 360 GMKPAGYVSE ASRESGLVII DNSLALVETL MDERRWSDMF SCMIAKATVL EEVSTGIAGS 420 RNGALLLMKA ELQVLSPLVP IREVTFLRFC KQLAEGAWAV VDVSIDGLVR DHNSGTAPTG 480 GNVKCRRVPS GCVMQDTPNG YCKVTWVEHT EYDEASVHQL YRPLLRSGLA FGARRWLATL 540 QRQCECLAIL MSSATVTAND STAISQEGKR SMLKLARRMT ENFCAGVSAS SAREWSKLDG 600 ATGSIGEDVR VMARKSVSEP GEPPGVVLSA ATSVWVPVAP EKLFNFLRDE QLRAEWDILS 660 NGGPMQEMTQ IAKGQRDGNS VSLLRASAVS ANQSSMLILQ ETCTDASGSI VVYAPVDIPA 720 MQLVMNGGDS TYVALLPSGF AILPDGPRIG ATGYETGGSL LTVAFQILVN NQPTAKLTVE 780 SVETVNNLIS CTIKKIKTAL QCDA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 40 | 47 | GGRMLGGG |
2 | 95 | 99 | RKRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.6039 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37988207 | 0.0 | ||||
Expression Atlas | Q6EPF0 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00421 | DAP | Transfer from AT4G00730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g45250.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g45250 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB101648 | 0.0 | AB101648.1 Oryza sativa Japonica Group Roc5 mRNA for GL2-type homeodomain protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625616.1 | 0.0 | homeobox-leucine zipper protein ROC5 | ||||
Swissprot | Q6EPF0 | 0.0 | ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5 | ||||
TrEMBL | A0A0D3F8T4 | 0.0 | A0A0D3F8T4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9YWC5 | 0.0 | A0A0D9YWC5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0NJ49 | 0.0 | A0A0E0NJ49_ORYRU; Uncharacterized protein | ||||
STRING | OGLUM02G28170.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | ORUFI02G29080.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS02T0674800-01 | 0.0 | (Oryza sativa) | ||||
STRING | OBART02G27630.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1203 | 37 | 116 | Representative plant | OGRP145 | 15 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61150.1 | 0.0 | homeodomain GLABROUS 1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g45250.1 |
Entrez Gene | 4330297 |
Publications ? help Back to Top | |||
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