PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os02g45200.4

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Dof

Protein Properties

Length: 367aa MW: 36903.9 Da PI: 8.7349

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os02g45200.4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.1	2.3e-39	61	122	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss LOC_Os02g45200.4 61 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 122 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-31	57	119	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-33	63	119	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	65	119	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	67	103	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MEEMLMGANP NPNGSSNQPP PPPSSAASAQ RPIAPPAAGA AAGAGAAGAG AGTERRARPQ 60 KEKALNCPRC NSTNTKFCYY NNYSLQQPRY FCKTCRRYWT EGGSLRNVPV GGGSRKNKRS 120 SSSVVPSAAA SASTSAAVSG SVPVGLAAKN PKLMHEGAQD LNLAFPHHHG RALQPPEFTA 180 FPSLESSSVC NPGGNLAAAN GAGGRGSVGA FSAMELLRST GCYVPLPQMA PLGMPAEYAA 240 AGFHLGEFRM PPPPQQQQQQ QAQTVLGFSL DTHGAGAGGG SGVFGACSAG LQESAAGRLL 300 FPFEDLKPVV SAAAGDANSG GDHQYDHGKN QGGGGGVIGG HEAPGFWNSS MIGNGSSNGG 360 GGGGSW*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MEEMLMGANP NPNGSSNQPP PPPSSAASAQ RPIAPPAAGA AAGAGAAGAG AGTERRARPQ  60
KEKALNCPRC NSTNTKFCYY NNYSLQQPRY FCKTCRRYWT EGGSLRNVPV GGGSRKNKRS  120
SSSVVPSAAA SASTSAAVSG SVPVGLAAKN PKLMHEGAQD LNLAFPHHHG RALQPPEFTA  180
FPSLESSSVC NPGGNLAAAN GAGGRGSVGA FSAMELLRST GCYVPLPQMA PLGMPAEYAA  240
AGFHLGEFRM PPPPQQQQQQ QAQTVLGFSL DTHGAGAGGG SGVFGACSAG LQESAAGRLL  300
FPFEDLKPVV SAAAGDANSG GDHQYDHGKN QGGGGGVIGG HEAPGFWNSS MIGNGSSNGG  360
GGGGSW*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.4183	0.0	callus\| flower\| leaf\| panicle\| root\| seed

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	156764062	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in germinating seeds 3 to 5 days after imbibition. {ECO:0000269\|PubMed:11470159}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os02g45200.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os02g45200

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB028130	0.0	AB028130.1 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-9.
GenBank	AK287447	0.0	AK287447.1 Oryza sativa Japonica Group cDNA, clone: J043016O04, full insert sequence.
GenBank	AP005885	0.0	AP005885.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0657H12.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627551.1	0.0	dof zinc finger protein 2 isoform X2
Swissprot	B9F1L8	0.0	DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBL	A0A0D9YWB9	0.0	A0A0D9YWB9_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0NJ43	0.0	A0A0E0NJ43_ORYRU; Uncharacterized protein
STRING	OGLUM02G28130.2	0.0	(Oryza glumipatula)
STRING	ORUFI02G29040.2	0.0	(Oryza rufipogon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	8e-43	Dof family protein

Link Out ? help Back to Top
Phytozome	LOC_Os02g45200.4

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]