PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g45080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | G2-like | ||||||||
Protein Properties | Length: 254aa MW: 28576.9 Da PI: 10.7736 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98.2 | 5.9e-31 | 20 | 72 | 2 | 54 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 prlrWt eLH++Fv+a++ LGG++kAtPk il+lm+v gLt++hvkSHLQ+YR LOC_Os02g45080.1 20 PRLRWTAELHRSFVRAIDCLGGQQKATPKLILQLMDVRGLTISHVKSHLQMYR 72 8**************************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-29 | 16 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.077 | 16 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.15E-15 | 18 | 72 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-22 | 20 | 72 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.9E-6 | 21 | 72 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGISGERKGA ARQYNRSKVP RLRWTAELHR SFVRAIDCLG GQQKATPKLI LQLMDVRGLT 60 ISHVKSHLQM YRGTRHGIGQ NDMQPQLHLK QHSFGSDEQS PKEFMCPPIK RAKVGTEASG 120 KYRCMEGSSD MRSSAPPAGT RYFIDDCMRL QEVSMDRRRS DQHDAAAAAR ARAPAAAASS 180 LHQALGFWVQ GRREEPFMVH QISKPKAHQL NHMVRNMKIS CKENHESRFF MSLVMVLLLI 240 SADLVSRETP SKL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 6e-17 | 21 | 76 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-17 | 21 | 76 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-17 | 21 | 76 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-17 | 21 | 76 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g45080.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g45080 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004160 | 1e-151 | AP004160.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1197_E09. | |||
GenBank | AP004188 | 1e-151 | AP004188.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1493_H11. | |||
GenBank | AP014958 | 1e-151 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 1e-151 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624520.1 | 1e-174 | uncharacterized protein LOC107276067 | ||||
TrEMBL | I1P310 | 0.0 | I1P310_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA02G0236600.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2966 | 35 | 83 | Representative plant | OGRP285 | 15 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 7e-32 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g45080.1 |