PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os02g45054.1 | ||||||||
Common Name | LOC4330280, OJ1493_H11.12, Os02g0672100, OsJ_07891, OSNPB_020672100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 616aa MW: 63597.7 Da PI: 8.6313 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.5e-05 | 95 | 117 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H LOC_Os02g45054.1 95 FVCEVCNKGFQREQNLQLHRRGH 117 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.5 | 0.00091 | 172 | 194 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + LOC_Os02g45054.1 172 WKCDKCSKRYAVQSDWKAHSKIC 194 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.68E-7 | 94 | 117 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.6E-6 | 94 | 117 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.094 | 95 | 117 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0041 | 95 | 117 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 4.0E-5 | 95 | 117 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 97 | 117 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.2E-4 | 160 | 193 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.68E-7 | 167 | 192 | No hit | No description |
SMART | SM00355 | 140 | 172 | 192 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 616 aa Download sequence Send to blast |
MASNSSAAAV AALFGIRDGD HEDQIKPLFA QQQQHHHHQP PMAPSNAAAA ASAAGSAAGQ 60 AAVAAPPAKK KRTLPDPDAE VIALSPKTLL ATNRFVCEVC NKGFQREQNL QLHRRGHNLP 120 WKLKQKNPLQ AQRRRVYLCP EPTCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR 180 YAVQSDWKAH SKICGTREYR CDCGTLFSRR DSFITHRAFC DALAQESARL PPAAAGHLYG 240 SAGAANMALS LSQVGSHLAS TLQDHGHHHH HHGASPDLLR FGGSGGGAMA ARLEHLLSSS 300 SASAFRPLPP PQQQPPAPFL LGAAPQGFGD GGDGSGPHGF LQGKPFHGLM QLPDLQGNGT 360 GGPSPSGPGL YNLGYIANSA NSSGTSSHGH ASQGQMTNTD QFSEGGGGGG GGGGSETSAA 420 ALFGAGGNFS GGDHHQVSPA GMYANDQAMM LPQMSATALL QKAAQMGSST SSANGAGASV 480 FGGGFAGSSA PSSIPHGRGT TMVDQGQMHL QSLMNSLAGG GNADHQGMFG SGSMIDPRLY 540 DMDQHEVKFS LQRGGGGGGD GDVTRDFLGV GGGGFMRGMS MARGEHHGGG GSDMHGTLEA 600 EMKSASSSFN GGRMQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-34 | 168 | 230 | 3 | 65 | Zinc finger protein JACKDAW |
5b3h_F | 3e-34 | 168 | 230 | 3 | 65 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.17568 | 0.0 | callus| flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 37990226 | 0.0 | ||||
Expression Atlas | Q6EU15 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os02g45054.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os02g45054 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK120603 | 0.0 | AK120603.1 Oryza sativa Japonica Group cDNA clone:J013149P10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626115.1 | 0.0 | protein indeterminate-domain 4, chloroplastic | ||||
Refseq | XP_015626116.1 | 0.0 | protein indeterminate-domain 4, chloroplastic | ||||
Refseq | XP_015626117.1 | 0.0 | protein indeterminate-domain 4, chloroplastic | ||||
Refseq | XP_015626118.1 | 0.0 | protein indeterminate-domain 4, chloroplastic | ||||
TrEMBL | A0A0D9YWA5 | 0.0 | A0A0D9YWA5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | B8AGE9 | 0.0 | B8AGE9_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q6EU15 | 0.0 | Q6EU15_ORYSJ; Finger protein pcp1-like | ||||
STRING | OGLUM02G28000.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | OS02T0672100-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1733 | 37 | 98 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G02670.1 | 1e-103 | indeterminate(ID)-domain 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os02g45054.1 |
Entrez Gene | 4330280 |