PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g44370.1
Common NameLOC4330231, OJ1001_D02.13, Os02g0663100, OsJ_07832, OSNPB_020663100, P0516F12.31
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 716aa    MW: 74131.9 Da    PI: 6.2455
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g44370.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS280.26.2e-863577143374
              GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                       + L ++A+a ++g+   a+++Larl+++  p g+p+ R a+y+ eAL   la+s +++++      t++ +++ +laa+k fs++sP+l+f++
  LOC_Os02g44370.1 357 DELAAAAKATEAGNSVGAREILARLNQQLPPLGKPFLRSASYLREALLLALADSHHGVSS-----VTTPLDVALKLAAYKSFSDLSPVLQFAN 444
                       7899*************************************************6666553.....444456889******************* PP

              GRAS  96 ltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                       +ta qa+l+++ g   +++H+iDfd++ G+QW+++lq+La R+       p l++T+++s +s++  el+ t+++L++fA+ lg+pfefn++ 
  LOC_Os02g44370.1 445 FTATQALLDEIGGTatSCIHVIDFDLGVGGQWASFLQELAHRRaaggVTLPLLKLTAFVSTASHHPLELHLTQDNLSQFAADLGIPFEFNAV- 536
                       *************98899**********************99976544599****************************************8. PP

              GRAS 183 akrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                         +l+++++ eL  ++ +E++aV+l +          +     +++L+lvk+lsPk+vv +++ ad+ + sF ++fl++++ ++ l+dsl+a 
  LOC_Os02g44370.1 537 --SLDAFNPGELISSTgDEVVAVSLPVGCSARA---PP----LPAILRLVKQLSPKIVVAIDHGADRADLSFSQHFLNCFQSCVFLLDSLDAA 620
                       ..9*********888889********9777665...44....556*********************************************888 PP

              GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                        + +++ + k+Er+l+++++ ++v  +++       ++  Wr+ + +aGFkpvp s+ a++qa++ll++v+++g++ve+  ++l+l+W++ +L
  LOC_Os02g44370.1 621 -GIDADSACKIERFLIQPRVHDMVLGRHKV-----HKAIAWRSVFAAAGFKPVPPSNLAEAQADCLLKRVQVRGFHVEKCGAALTLYWQRGEL 707
                       .7899*******************988876.....56889***************************************************** PP

              GRAS 368 vsvSaWr 374
                       vs+S+Wr
  LOC_Os02g44370.1 708 VSISSWR 714
                       ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.956329694IPR005202Transcription factor GRAS
PfamPF035142.1E-83357714IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MRAALFGAER SGVVDLGGIG GGNRGLFWPA GKGGLVVVEP RSVLDCTRSP SPRNSTSTLS  60
SSQGGGGADS TGVAAVSESS AAAAEATKWG APGEHGGGGG GGGGGGKEDW SSGCELPPIP  120
GTLDVGLVGG EGWDTMLGNA AAAAAGQDQS FLNWIIGAAG DLEQPGPPLL DNAGFGIPAV  180
DPLGFSLDHS LSGVASDLSS SGAHTATGGA GGGKASLGFG LFSPEATSLE QPPPPMLFHE  240
GIDTKPPLLG AQPPGLLNHY HHQPPNPAAT FFMPHPSFPE HNHQSPLLQP PPKRHHSMPD  300
DIYLARNQLP PAAAAAQGLP FSPLHASVPF QLQPSPPPIR GAMKTTAAEA AQQQLLDELA  360
AAAKATEAGN SVGAREILAR LNQQLPPLGK PFLRSASYLR EALLLALADS HHGVSSVTTP  420
LDVALKLAAY KSFSDLSPVL QFANFTATQA LLDEIGGTAT SCIHVIDFDL GVGGQWASFL  480
QELAHRRAAG GVTLPLLKLT AFVSTASHHP LELHLTQDNL SQFAADLGIP FEFNAVSLDA  540
FNPGELISST GDEVVAVSLP VGCSARAPPL PAILRLVKQL SPKIVVAIDH GADRADLSFS  600
QHFLNCFQSC VFLLDSLDAA GIDADSACKI ERFLIQPRVH DMVLGRHKVH KAIAWRSVFA  660
AAGFKPVPPS NLAEAQADCL LKRVQVRGFH VEKCGAALTL YWQRGELVSI SSWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-2543071480375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.882090.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329862440.0
Expression AtlasQ6H6L0-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g44370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g44370
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1010350.0AK101035.1 Oryza sativa Japonica Group cDNA clone:J023150P14, full insert sequence.
GenBankAP0040370.0AP004037.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1001_D02.
GenBankAP0048830.0AP004883.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0516F12.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627071.10.0scarecrow-like protein 6
TrEMBLQ6H6L00.0Q6H6L0_ORYSJ; Os02g0663100 protein
STRINGOS02T0663100-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.14e-92GRAS family protein