PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g44360.1
Common NameLOC4330230, OJ1001_D02.11-1, Os02g0662700, OSNPB_020662700, P0516F12.29-1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 710aa    MW: 74248.2 Da    PI: 5.9887
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g44360.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS277.63.7e-853517083374
              GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                       + L ++A+a ++g+   a+++Larl+++  + g+p+ R a+y++eAL   la+  s+  ++  +s+    +++ +laa+k fs++sP+l+f++
  LOC_Os02g44360.1 351 DELAAAAKATEAGNSVGAREILARLNQQLPQLGKPFLRSASYLKEALLLALAD--SHHGSSGVTSPL---DVALKLAAYKSFSDLSPVLQFTN 438
                       7899*************************************************..444444555555...499******************** PP

              GRAS  96 ltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                       +ta qa+l+++ g   +++H+iDfd++ G+QW+++lq+La R+       p l++T++ s +s++  el+ t+++L++fA+el++pfefn++ 
  LOC_Os02g44360.1 439 FTATQALLDEIGGMatSCIHVIDFDLGVGGQWASFLQELAHRRgaggMALPLLKLTAFMSTASHHPLELHLTQDNLSQFAAELRIPFEFNAV- 530
                       ************998899************************966444489****************************************8. PP

              GRAS 183 akrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                         +l+++++ eL  ++ +E++aV+l +          +     +++L+lvk+l Pkvvv +++  d+ + +F ++fl++++ ++ l+dsl+a 
  LOC_Os02g44360.1 531 --SLDAFNPAELISSSgDEVVAVSLPVGCSARA---PP----LPAILRLVKQLCPKVVVAIDHGGDRADLPFSQHFLNCFQSCVFLLDSLDAA 614
                       ..99*****999777779********9777665...44....556*********************************************888 PP

              GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                        + +++ + k+Er+l++++++++v  ++++     +++  Wr+ + + GFkpv+ls+ a++qa++ll++v+++g++ve++ ++l+l+W++ +L
  LOC_Os02g44360.1 615 -GIDADSACKIERFLIQPRVEDAVIGRHKA-----QKAIAWRSVFAATGFKPVQLSNLAEAQADCLLKRVQVRGFHVEKRGAALTLYWQRGEL 701
                       .7899*******************999888.....78899***************************************************** PP

              GRAS 368 vsvSaWr 374
                       vs+S+Wr
  LOC_Os02g44360.1 702 VSISSWR 708
                       ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.744323688IPR005202Transcription factor GRAS
PfamPF035141.3E-82351708IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MRAALFGAER SGVVDHGGGD KEELFWPAGK GGLVVVEPRS VLDCTRSPSP PYSTSTLSSS  60
LGGGSADSTG VAAVSESSTA AAGATKWGAP GEHGGGGKEE WGGGCELPPI PGALDVGLVG  120
GEGWDATATL GNAAGPDQSF LNWIIGAAGD LEQPGPPLPV LQQPLIDNAG FGIPAVDTMG  180
FSLDHPLSGV ASDLSSSGAH TATGGGGKAS LGFGLFSPEA TSLEQPPPSM LFHEGIDTKP  240
PLLGAQPQFL LNHYQPQPPN PAAALFMPLP PFPEHNHQSP HLQPPLKRHH AIPDDLYLAR  300
NQQQSSAVAP GLAYSPPLHG PAPFQLHPSP PPIRGAMKST AAEAAQQQLL DELAAAAKAT  360
EAGNSVGARE ILARLNQQLP QLGKPFLRSA SYLKEALLLA LADSHHGSSG VTSPLDVALK  420
LAAYKSFSDL SPVLQFTNFT ATQALLDEIG GMATSCIHVI DFDLGVGGQW ASFLQELAHR  480
RGAGGMALPL LKLTAFMSTA SHHPLELHLT QDNLSQFAAE LRIPFEFNAV SLDAFNPAEL  540
ISSSGDEVVA VSLPVGCSAR APPLPAILRL VKQLCPKVVV AIDHGGDRAD LPFSQHFLNC  600
FQSCVFLLDS LDAAGIDADS ACKIERFLIQ PRVEDAVIGR HKAQKAIAWR SVFAATGFKP  660
VQLSNLAEAQ ADCLLKRVQV RGFHVEKRGA ALTLYWQRGE LVSISSWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-233497084375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195103GGKEEWGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.882690.0flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329829230.0
Expression AtlasQ6H6L3-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g44360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g44360
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040370.0AP004037.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1001_D02.
GenBankAP0048830.0AP004883.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0516F12.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627415.10.0scarecrow-like protein 6
TrEMBLQ6H6L30.0Q6H6L3_ORYSJ; Os02g0662700 protein
STRINGOS02T0662700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.13e-93GRAS family protein