PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g44130.1 | ||||||||
Common Name | LOC4330217, Os02g0659500, OsJ_07814, OSNPB_020659500, P0708H12.21 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 342aa MW: 35266.2 Da PI: 5.5842 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.3e-05 | 6 | 26 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C ++F ++ L H+r+H LOC_Os02g44130.1 6 CKLCYRRFASPRALAGHMRSH 26 ********************9 PP | |||||||
2 | zf-C2H2 | 11.4 | 0.00099 | 198 | 220 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k+F++ L H +H LOC_Os02g44130.1 198 FQCPACKKVFRSYQALGGHRASH 220 89**********99999998887 PP | |||||||
3 | zf-C2H2 | 10.9 | 0.0014 | 262 | 284 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++F + L H ++H LOC_Os02g44130.1 262 HECPYCYRVFASGQALGGHKKSH 284 79************999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.14 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.141 | 4 | 27 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.2E-4 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.6E-11 | 197 | 220 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.026 | 198 | 220 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.286 | 198 | 220 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.44E-7 | 198 | 220 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 200 | 220 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.44E-7 | 257 | 284 | No hit | No description |
Pfam | PF13912 | 9.9E-12 | 262 | 284 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.39 | 262 | 284 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.912 | 262 | 284 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 264 | 284 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009071 | anatomy | anther wall tapetum | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MAKNACKLCY RRFASPRALA GHMRSHSVAA ANAAAAAAAA AAAKLQISSA SSASTSFTAA 60 DEEEEEEEEE EDVGFKKPLS IYALRENPKR SLRVSEYAFS DRESEAESTP TPAAKGLRAG 120 GGGGGGDGEP MSSLSYAGTP EEEVALALMM LSRDTWPSVE RGGGGGEYSD DGSDDGYALP 180 PPSPAPAPAP VPEKRTRFQC PACKKVFRSY QALGGHRASH VRGGRGGCCA PPVAPPPQPH 240 PQPPLPEHDA GEEDMDGKAP PHECPYCYRV FASGQALGGH KKSHVCSAAA AAAHAQTPGG 300 GAPPPQPKIL GMIDLNFAPP VDEVELSAVS DPHFPSNPPG P* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.52090 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115447722 | 0.0 | ||||
Expression Atlas | Q6H6A6 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g44130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g44130 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005072 | 0.0 | AP005072.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0708H12. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624884.1 | 0.0 | zinc finger protein ZAT1 | ||||
TrEMBL | Q6H6A6 | 0.0 | Q6H6A6_ORYSJ; Os02g0659500 protein | ||||
STRING | OS02T0659500-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3518 | 33 | 77 | Representative plant | OGRP2404 | 10 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 2e-22 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g44130.1 |
Entrez Gene | 4330217 |