PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g43970.1 | ||||||||
Common Name | LOC4330203, OJ1112_F09.1, Os02g0657000, OSNPB_020657000, P0519E06.31 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 226aa MW: 23144.5 Da PI: 5.0812 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.8 | 1.3e-18 | 49 | 98 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g LOC_Os02g43970.1 49 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 98 69****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-32 | 49 | 107 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.998 | 49 | 106 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-12 | 49 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-22 | 49 | 107 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.2E-37 | 49 | 112 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.88E-30 | 50 | 108 | No hit | No description |
PRINTS | PR00367 | 9.8E-11 | 50 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.8E-11 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009037 | anatomy | lemma | ||||
PO:0001047 | developmental stage | lemma development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MDDSSFGSEP TTSSSGGEAP ASPPSTASSS SDGAGGKKKR PRKDGHHPTY RGVRMRSWGK 60 WVSEIREPRK KSRIWLGTFA TAEMAARAHD VAALAIKGRA AHLNFPDLAH ELPRPATAAP 120 KDVQAAAALA AAADFPASSA NAGASNNPDG SDDASAGSAS PPPPPDAADD ALFDLPDLLL 180 DLRYGPPSSG LSCASSWEDE VGLISGAGAA AAGVFRLEEP LLWEY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-17 | 47 | 106 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.50639 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32994039 | 0.0 | ||||
Expression Atlas | Q6H6G4 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g43970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g43970 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ307662 | 0.0 | AJ307662.1 Oryza sativa genomic DNA fragment, chromosome 2. | |||
GenBank | AK108830 | 0.0 | AK108830.1 Oryza sativa Japonica Group cDNA clone:002-151-G03, full insert sequence. | |||
GenBank | AP005006 | 0.0 | AP005006.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0519E06. | |||
GenBank | AP005289 | 0.0 | AP005289.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1112_F09. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY258279 | 0.0 | AY258279.1 Oryza sativa (japonica cultivar-group) CR102 putative AP2 domain-containing protein gene, complete cds. | |||
GenBank | AY346094 | 0.0 | AY346094.1 Oryza sativa AP2 domain-containing protein Rap211 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624298.1 | 1e-157 | ethylene-responsive transcription factor ERF039 | ||||
Swissprot | Q8LBQ7 | 7e-52 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A0E0GAM7 | 1e-156 | A0A0E0GAM7_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0NIP7 | 1e-156 | A0A0E0NIP7_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q6H6G4 | 1e-156 | Q6H6G4_ORYSJ; Os02g0657000 protein | ||||
TrEMBL | Q949B2 | 1e-156 | Q949B2_ORYSA; AP2 domain-containing protein Rap211 | ||||
STRING | ORUFI02G28010.1 | 1e-156 | (Oryza rufipogon) | ||||
STRING | OS02T0657000-01 | 1e-156 | (Oryza sativa) | ||||
STRING | ONIVA02G28990.1 | 1e-156 | (Oryza nivara) | ||||
STRING | OBART02G26590.1 | 1e-156 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 2e-39 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g43970.1 |
Entrez Gene | 4330203 |
Publications ? help Back to Top | |||
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