PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g43940.1
Common NameLOC4330202, Os02g0656600, OsJ_07793, OSNPB_020656600, P0519E06.28
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 288aa    MW: 29450.3 Da    PI: 4.7425
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g43940.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.5e-1997147155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       + y+GVr+++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  LOC_Os02g43940.1  97 PSYRGVRRRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 147
                       57*****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-1397147IPR001471AP2/ERF domain
CDDcd000183.95E-2997155No hitNo description
SMARTSM003804.2E-3798161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-3298156IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2198155IPR016177DNA-binding domain
PROSITE profilePS5103224.11898155IPR001471AP2/ERF domain
PRINTSPR003676.6E-1199110IPR001471AP2/ERF domain
PRINTSPR003676.6E-11121137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009047anatomystem
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEAAAIHAPT TTTSSDSGSC VTNGTREKRE ISKHKQLKRK RSTSPAPPPG CGGGQGQEAA  60
VETDADAGAA GEEESSSCGG AGAGEGERKR GDAGRHPSYR GVRRRSWGKW VSEIREPRKK  120
SRIWLGTFPT AEMAARAHDV AALAIKGRAA HLNFPSLAHT LPRPASTSPS DIQAAAALAA  180
AAAATDQCES SSSAVAAATA TDAEAAESTS SAAASPCAAT SSVEENALFD LPDLLLDLSD  240
GLWCSPVWTT APADQYDAGD DGDDAAAPLL WAEQCWMDAP AAPVQPD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1990155672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1009730.0panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166312990.0
Expression AtlasQ6H6G7-
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g43940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g43940
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3076620.0AJ307662.1 Oryza sativa genomic DNA fragment, chromosome 2.
GenBankAP0050060.0AP005006.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0519E06.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAY3452320.0AY345232.1 Oryza sativa transcription factor Rap212 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626317.10.0ethylene-responsive transcription factor TINY
SwissprotQ8LBQ78e-50ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLQ6H6G70.0Q6H6G7_ORYSJ; Os02g0656600 protein
TrEMBLQ949C00.0Q949C0_ORYSA; Putative AP2 domain transcription factor
STRINGOS02T0656600-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.13e-42ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]