PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g43790.1
Common NameLOC4330189, OJ1003_B06.13, Os02g0654700, OSNPB_020654700
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 304aa    MW: 31632.1 Da    PI: 6.3008
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g43790.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.2e-19148198255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f++aeeAa a+++a+ +++g
  LOC_Os02g43790.1 148 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFDSAEEAAVAYDRAAYRMRG 198
                       8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.61E-29147206No hitNo description
Gene3DG3DSA:3.30.730.101.0E-31147206IPR001471AP2/ERF domain
SMARTSM003802.0E-38148212IPR001471AP2/ERF domain
PfamPF008472.0E-13148198IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-23148208IPR016177DNA-binding domain
PROSITE profilePS5103224.197148206IPR001471AP2/ERF domain
PRINTSPR003671.4E-10149160IPR001471AP2/ERF domain
PRINTSPR003671.4E-10172188IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MLLNPASREV AALDSIRHHL LEEEEETPAT APAPTRRPVY CRSSSFGSLV ADQWSESLPF  60
RPNDAEDMVV YGALRDAFSS GWLPDGSFAA VKPESQDSYD GSSIGSFLAS SSSEAGTPGE  120
VTSTEATVTP GIREGEGEAV AVASRGKHYR GVRQRPWGKF AAEIRDPAKN GARVWLGTFD  180
SAEEAAVAYD RAAYRMRGSR ALLNFPLRIG SEIAAAAAAA AAGNKRPYPD PASSGSSSPS  240
SSSSSSSSSS SGSPKRRKRG EAAAASMAMA LVPPPPPPAQ APVQLALPAQ PWFAAGPIQQ  300
LVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-38144211168ATERF1
3gcc_A4e-38144211168ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.536600.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329838350.0
Expression AtlasQ6H7H6-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitously expressed, mostly in flowers and rosettes after ethylene treatment. {ECO:0000269|PubMed:11950980}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g43790.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g43790
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1059400.0AK105940.1 Oryza sativa Japonica Group cDNA clone:001-205-B11, full insert sequence.
GenBankAP0046760.0AP004676.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1003_B06.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAY8313940.0AY831394.1 Oryza sativa (indica cultivar-group) BTH-induced ERF transcriptional factor 3 (BIERF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623259.10.0ethylene-responsive transcription factor 2
SwissprotO803373e-54EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLA0A0E0NIM40.0A0A0E0NIM4_ORYRU; Uncharacterized protein
TrEMBLQ5MFV10.0Q5MFV1_ORYSI; BTH-induced ERF transcriptional factor 3
TrEMBLQ6H7H60.0Q6H7H6_ORYSJ; Os02g0654700 protein
STRINGORUFI02G27830.10.0(Oryza rufipogon)
STRINGOS02T0654700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38002972
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-41ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]