PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g43560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 190aa MW: 20495.6 Da PI: 8.492 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 35.3 | 2.3e-11 | 163 | 187 | 1 | 27 |
---SS-EEEEEEE--TT-SS-EEEEEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrC 27 ldDgy+WrKYGqK+vk+s +pr Y C LOC_Os02g43560.1 163 LDDGYKWRKYGQKVVKNSLHPR--YIC 187 59*******************9..555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.5E-13 | 148 | 187 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-10 | 155 | 187 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.035 | 158 | 189 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.4E-4 | 163 | 189 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-7 | 164 | 185 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MHTCMEGGGQ LGTCLPNFYL LPDHHGMPLP PPLQLPCHPK LLQMPFDQED QPGIHGVMLS 60 SDHCGLYPLP ALPLSNSAAA AAATVALGKH SAAAGSMPNI GGAEEVATTV TKAGNESTTC 120 NGSTTWWRGS TMAAMGEKGK MKIRRKMREP RFCFQTRSEV DVLDDGYKWR KYGQKVVKNS 180 LHPRYICST* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.53486 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32982929 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g43560.1 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g43560 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK072906 | 0.0 | AK072906.1 Oryza sativa Japonica Group cDNA clone:J023147K18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624962.1 | 1e-136 | probable WRKY transcription factor 12 | ||||
Swissprot | Q93WY4 | 5e-28 | WRK12_ARATH; Probable WRKY transcription factor 12 | ||||
TrEMBL | A0A0E0NIJ9 | 1e-131 | A0A0E0NIJ9_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI02G27620.1 | 1e-131 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1138 | 38 | 130 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44745.1 | 2e-29 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g43560.1 |
Publications ? help Back to Top | |||
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