PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g43330.1 | ||||||||
Common Name | HOX24, LOC4330155, Os02g0649300, P0048B08.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 262aa MW: 28537.4 Da PI: 4.606 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.8 | 3.8e-18 | 65 | 118 | 4 | 56 |
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ft+eq++ Le+ F+ ++ +e++eLA++lgL+ rqV +WFqN+Ra+++ LOC_Os02g43330.1 65 KRRFTEEQVRSLETTFHArRAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 118 458**************8899********************************9 PP | |||||||
2 | HD-ZIP_I/II | 122.4 | 2.3e-39 | 63 | 156 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 e+krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kq+E+dy+aL+++ydal+++ e+L++e+ +L+++++ LOC_Os02g43330.1 63 ERKRRFTEEQVRSLETTFHARRaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYAALRAQYDALHARVESLRQEKLALADQVD 155 69*****************9999******************************************************************9997 PP HD-ZIP_I/II 93 e 93 e LOC_Os02g43330.1 156 E 156 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-19 | 44 | 121 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.55E-17 | 52 | 121 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.216 | 59 | 120 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-17 | 62 | 124 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.39E-16 | 64 | 121 | No hit | No description |
Pfam | PF00046 | 1.5E-15 | 65 | 118 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 6.5E-7 | 91 | 100 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 95 | 118 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.5E-7 | 100 | 116 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.0E-15 | 120 | 161 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001004 | developmental stage | anther development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MESDCQFLVA PPQPHMYYDT AAAAVDEAQF LRQMVAAADH HAAAAGRGGG DGDGGGGGGG 60 GGERKRRFTE EQVRSLETTF HARRAKLEPR EKAELARELG LQPRQVAIWF QNKRARWRSK 120 QIEHDYAALR AQYDALHARV ESLRQEKLAL ADQVDELRGK LNERQDQSGS CDGGGAEGDD 180 DDKRNSVMNA SSSGLVEEDY VSCLAVPVVD VSEDGSAACG GSSYEYDHHL DYLGGGQLPD 240 PFCGMPDLWE IWPMVEWNAV A* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.49245 | 0.0 | leaf| stem | ||||
Os.84462 | 0.0 | leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32973703 | 0.0 | ||||
Expression Atlas | Q6H6S3 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g43330.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g43330 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063685 | 0.0 | AK063685.1 Oryza sativa Japonica Group cDNA clone:001-119-F01, full insert sequence. | |||
GenBank | EU847515 | 0.0 | EU847515.1 Oryza sativa Japonica Group clone OsHD6B homeobox leucine zipper protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624138.1 | 0.0 | homeobox-leucine zipper protein HOX24 | ||||
Swissprot | Q6H6S3 | 0.0 | HOX24_ORYSJ; Homeobox-leucine zipper protein HOX24 | ||||
TrEMBL | B7E8X8 | 0.0 | B7E8X8_ORYSJ; Homeobox leucine zipper protein | ||||
STRING | OS02T0649300-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4027 | 31 | 75 | Representative plant | OGRP14598 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 3e-32 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g43330.1 |
Entrez Gene | 4330155 |
Publications ? help Back to Top | |||
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