PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g42850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 294aa MW: 31173.4 Da PI: 4.7563 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.6 | 2.4e-17 | 45 | 89 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g +++eE+e +++ lG++ W++Iar+++ gRt++++k++w++yl LOC_Os02g42850.1 45 GVFSPEEEETVMSLHAALGNK-WSRIARHLP-GRTDNEVKNYWNSYL 89 789******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.7E-9 | 24 | 50 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.28E-22 | 24 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.066 | 25 | 38 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 25.603 | 39 | 93 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-15 | 43 | 91 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 45 | 89 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.85E-12 | 47 | 89 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-22 | 51 | 90 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MCIVCCCLRA GLTRICPAIG AGLQRNGKSC RLRWINYLRP GLKHGVFSPE EEETVMSLHA 60 ALGNKWSRIA RHLPGRTDNE VKNYWNSYLK KRVESGGGKT SQGPPTTPAS AASSPADSDD 120 SHSLQQKPHE PANSDSSEPA HESSSASADS SCLTVTTDHP PVSRPHAAVT PKVMFADWLD 180 MEYICGQVAA APGLDAAGFA VVGGAAGDQQ QQQQQVMSQD GSVHQADGPS CGVDDSSLQQ 240 QQQEGFGGNG GCWDFQEQFD SIDQMQASGG GGGFCDLLSM SDFDLWAELE RTA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-19 | 25 | 95 | 40 | 110 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.9971 | 0.0 | callus| flower| leaf| panicle| seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g42850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g42850 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT837840 | 0.0 | CT837840.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA108D17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622999.1 | 0.0 | transcription factor MYB21 | ||||
TrEMBL | A0A0E0NIC7 | 0.0 | A0A0E0NIC7_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q6H7C6 | 0.0 | Q6H7C6_ORYSJ; ATMYB4-like | ||||
STRING | ORUFI02G26980.1 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 4e-37 | myb domain protein 19 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g42850.1 |