PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g42585.1
Common NameLOC9268771, Os02g0638650, OSJNBa0014E22.30, OSNPB_020638650, P0010C01.6
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 474aa    MW: 50587.5 Da    PI: 7.7256
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g42585.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.9e-19225275256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  LOC_Os02g42585.1 225 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 275
                       59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.14E-33224284No hitNo description
SuperFamilySSF541715.17E-23225283IPR016177DNA-binding domain
PROSITE profilePS5103222.998225282IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-32225283IPR001471AP2/ERF domain
SMARTSM003805.9E-39225288IPR001471AP2/ERF domain
PfamPF008472.8E-12226275IPR001471AP2/ERF domain
PRINTSPR003678.7E-11226237IPR001471AP2/ERF domain
PRINTSPR003678.7E-11248264IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0010200Biological Processresponse to chitin
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MDAVDRGGGG GGGGARGHGR RWKGKGVSAA ISSSAAETQQ PVPVLEDAPA AAALLRPQKK  60
IRSPDRRLQR SISSLSSAPA SPDSSSVSNP MSPPAMSLPN QPPSSRHIFP FAYDPSPGAA  120
APRLLPLLQY SSLYPQPLLP QQQSPLQNQQ MISFGSSQQQ QQQQPQFGAA SPLFPPQFLP  180
PEEQQRLLLR YWSEALNLSP PGVRGGALPP SLYQHLLRAP GPPKLYRGVR QRHWGKWVAE  240
IRLPRNRTRL WLGTFDTAED AAMAYDREAF KLRGENARLN FPDLFLGKGR TGGSGRTSAS  300
AAASCSSSSS SAPPTPDESH TQQAQPQPQQ PTEESSNTEP KPLLFVAEQD GIPEPELNPQ  360
LQTAEQHGSD GNTAMFQPSV TSGGIWGPAD EAWFSAWGPG SSVWDYDMDS AHGLLLQSRL  420
AGEQTGMDYA YTAPEVLVAP VPAAGTAMAT AASSSLPPRP PPPCHSPTFA WKD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19224282463ATERF1
3gcc_A1e-19224282463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1011600.0panicle| seed
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6H5V2
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g42585.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g42585
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429860.0AK242986.1 Oryza sativa Japonica Group cDNA, clone: J090094O16, full insert sequence.
GenBankAP0047680.0AP004768.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0010C01.
GenBankAP0055130.0AP005513.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0014E22.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627619.10.0ethylene-responsive transcription factor ERF054
TrEMBLQ6H5V20.0Q6H5V2_ORYSJ; AP2 domain-containing transcription factor-like
STRINGOS02T0638650-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-36ERF family protein