PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g41800.2
Common NameARF8, B1469H02.12, LOC4330045, Os02g0628600, OsJ_07601
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ARF
Protein Properties Length: 660aa    MW: 71539.9 Da    PI: 7.1503
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g41800.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82.1e-23120221199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g  W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   +
  LOC_Os02g41800.2 120 FAKTLTQSDANNGGGFSVPRYCAETIfprldyaADPPVQ--TVVAKDVHGVAWNFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--R 208
                       89*****************************96555555..8************************************************..3 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                        +++ l+v+++r+
  LOC_Os02g41800.2 209 GDGGDLHVGIRRA 221
                       488999*****97 PP
2Auxin_resp116.62.1e-38271354183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                       aa+ a+ +++FevvY+Prast+eF+v+++ v++a++v++++GmRfkmafetedss++++ +Gtv++v+ +dp+rWp+S+Wr+L+
  LOC_Os02g41800.2 271 AARLANGGQPFEVVYYPRASTPEFCVRAAAVRAAMRVQWCPGMRFKMAFETEDSSRISWfMGTVASVQVADPIRWPQSPWRLLQ 354
                       67788999**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-37113223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-29116222IPR015300DNA-binding pseudobarrel domain
CDDcd100175.04E-22119220No hitNo description
PROSITE profilePS5086312.689120222IPR003340B3 DNA binding domain
SMARTSM010192.7E-20120222IPR003340B3 DNA binding domain
PfamPF023621.7E-21120221IPR003340B3 DNA binding domain
PfamPF065076.3E-33271354IPR010525Auxin response factor
PROSITE profilePS5174511.212595659IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000032anatomytetrad of microspores
PO:0001029developmental stageE tetrad stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MITFADLAEP APGAERCVDR QLWLACAGGM CTVPPVGAAV YYFPQGHAEH ALGLAAPELS  60
AARVPALVPC RVASVRYMAD PDTDEVFARI RLVPLRAAED GDVEEDGAAA GEEHEKPASF  120
AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YAADPPVQTV VAKDVHGVAW NFRHIYRGTP  180
RRHLLTTGWS TFVNQKKLVA GDSIVFLRGD GGDLHVGIRR AKRGFCGGGG GAEEASLPGW  240
DQYGGLMRGN ASPCAAAKGR GKVRAEDLVE AARLANGGQP FEVVYYPRAS TPEFCVRAAA  300
VRAAMRVQWC PGMRFKMAFE TEDSSRISWF MGTVASVQVA DPIRWPQSPW RLLQVTWDEP  360
DLLQNVKRVS PWLVELVSSM PAINLSSFSP PRKKPRILAY PEFPFEGQLL NPAFPPNPLA  420
HGHHHYHHNH PSFFPFPDVS APAGIQGARH AQFGPSLSDL HLTHLQSSLM YPGLRRPDHV  480
GPTSIPPPRI STDLTMGSSP PARALSMGAK KPDDAKPPGL MLFGQRILTE RQMSLSGTTS  540
PAATGNSSLN WNTEKGASEG SGSGVIQNSP TDNTSSERLQ WFRENSTVSE LGLEPGQCKV  600
FIESDTVGRN LDLSSLASFE QLYGRLSEMF CIDSAELRSR VLYRGATGEV RHAGDEPFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A8e-801837551388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.589060.0callus| panicle| root| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6K223
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g41800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g41800
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2432300.0AK243230.1 Oryza sativa Japonica Group cDNA, clone: J100044L04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622752.10.0auxin response factor 8
SwissprotQ6K2230.0ARFH_ORYSJ; Auxin response factor 8
TrEMBLA0A0E0NI240.0A0A0E0NI24_ORYRU; Auxin response factor
STRINGOS02T0628600-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Wang D, et al.
    Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa).
    Gene, 2007. 394(1-2): p. 13-24
    [PMID:17408882]