PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g41450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 253aa MW: 27232.3 Da PI: 9.3953 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.8 | 4.5e-32 | 25 | 105 | 53 | 128 |
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ev + ++++vg++ktLvfy+grap+g+kt Wvmhe+rl LOC_Os02g41450.1 25 LTASEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDREVRGSsssssSRAVVGMRKTLVFYQGRAPNGVKTGWVMHEFRL 105 3567************************************998666666666***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 38.771 | 1 | 124 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.44E-37 | 24 | 124 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.1E-16 | 28 | 105 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MRVFVLSKFI VVAICAYTNA EVAKLTASEW YFFSFRDRKY ATGSRTNRAT KTGYWKATGK 60 DREVRGSSSS SSSRAVVGMR KTLVFYQGRA PNGVKTGWVM HEFRLDSPHS QPREDWVLCR 120 VFQKRKGDGD GPQDSGGAAS PTFTGSMSTT TLSQLQPPDH RRHAAAAAGG YYVGSQQLAA 180 GYDSAAGFAN PTQPAVPHYQ YGGAVIGFPE EFGGGGGVAD EYGFGTYLDL GFELDDTASV 240 LGGIRSFPQG WN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-29 | 28 | 125 | 71 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-29 | 28 | 125 | 71 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-29 | 28 | 125 | 71 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-29 | 28 | 125 | 71 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-29 | 28 | 125 | 74 | 169 | NAC domain-containing protein 19 |
3swm_B | 5e-29 | 28 | 125 | 74 | 169 | NAC domain-containing protein 19 |
3swm_C | 5e-29 | 28 | 125 | 74 | 169 | NAC domain-containing protein 19 |
3swm_D | 5e-29 | 28 | 125 | 74 | 169 | NAC domain-containing protein 19 |
3swp_A | 5e-29 | 28 | 125 | 74 | 169 | NAC domain-containing protein 19 |
3swp_B | 5e-29 | 28 | 125 | 74 | 169 | NAC domain-containing protein 19 |
3swp_C | 5e-29 | 28 | 125 | 74 | 169 | NAC domain-containing protein 19 |
3swp_D | 5e-29 | 28 | 125 | 74 | 169 | NAC domain-containing protein 19 |
4dul_A | 5e-29 | 28 | 125 | 71 | 166 | NAC domain-containing protein 19 |
4dul_B | 5e-29 | 28 | 125 | 71 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.54416 | 0.0 | callus| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32990331 | 0.0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g41450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g41450 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK105122 | 0.0 | AK105122.1 Oryza sativa Japonica Group cDNA clone:001-101-C03, full insert sequence. | |||
GenBank | AP006847 | 0.0 | AP006847.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, fosmid clone:OSJNOa148N02. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624505.1 | 0.0 | NAC domain-containing protein 92 | ||||
TrEMBL | A3A972 | 1e-169 | A3A972_ORYSJ; Uncharacterized protein | ||||
STRING | ORGLA02G0213000.1 | 1e-152 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 4e-49 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g41450.1 |