PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g40950.1
Common NameOSJNBb0002N06.8
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 785aa    MW: 90621 Da    PI: 9.4172
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g40950.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.22.6e-1838118190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       +fYn YA + GF +r +k +k++ +++ t+r+ +Cs +g++ ++kk          + r+gC a++k++++   + w vtk+++ HnH++ 
  LOC_Os02g40950.1  38 NFYNVYAVSKGFGIRLDKDRKNT-KKQRTMRQICCSHQGRNPKTKKP---------SVRIGCPAMMKINRSGaGSGWSVTKVVSAHNHPMK 118
                       6*****************99995.555999*********99887655.........9**************99999************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-1438118IPR004330FAR1 DNA binding domain
PfamPF105512.0E-32240333IPR018289MULE transposase domain
PfamPF044341.1E-5522555IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.299522558IPR007527Zinc finger, SWIM-type
SMARTSM005754.0E-7533560IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
MVVDNVDSSA VIPLEYADPQ ILTPMLGQRF KTERDAYNFY NVYAVSKGFG IRLDKDRKNT  60
KKQRTMRQIC CSHQGRNPKT KKPSVRIGCP AMMKINRSGA GSGWSVTKVV SAHNHPMKKS  120
VGVTKNYQSH NQIDEGTRGI IEEMVDSSMS LTNMYGMLSR MHGGPSMVPF TRKAMDRLAY  180
AIRRDESSDD MQKTLDVLND LQKRSKNFFY SIQVDEACRV KNIFWSHAVS RLNFEHFGDV  240
ITFDTTYKTN KYNMPFAPFV GVSNHFQSTF FGCALLREET EESFTWLFNT FKECINGKVP  300
IGILTDNCPS MAAAIRTVFP NTIHRVCKWH VLKKAKEFMG NIYSKRHTFK KAFHKVLTQT  360
LTEEEFVAAW HKLIRDYNLE KSVYLRHIWD IRRKWAFVYF SHRFFAGMTT TQRSESANHV  420
FKMFVSPSSS MNGFVKRYDR FFNEKLQKED SEEFQTSNDK VEIKTRSPIE IHASQVYTRA  480
VFQLFSEELT DSLSYMVKPG EDESTVQVVR MNSQESFLRK EYQVSCDLER EEFSCVCKMF  540
EHKGILCSHI LRVLVQYGLS RIPERYILKR WTKDARDTIP PHLHGYKDDV DASQSRSYRH  600
VMLNRKTVEV AKIANKDVQT FKMAMRVMNK LLEDMKNQLS LDDGDNSREA PKRAARHKSR  660
STVLTEDGNE DVGGGDEDSE YDVPSEDEGG NLTADILPPL KKRSRGRPKV NRYKSGGEVA  720
SLKRRKEVGI EKNTTNECES VEEENQVIDH EDEVPFPRRF CHTCHEAGHN SRTCGRTSTY  780
KRKL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.911210.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976025290.0
Expression AtlasQ7XRZ8-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g40950.1
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g40950
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0068460.0AP006846.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, fosmid clone:OSJNOa283G08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880431.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLQ7XRZ80.0Q7XRZ8_ORYSJ; OSJNBb0002N06.8 protein
STRINGOS04T0354200-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-115FAR1-related sequence 5