PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g40070.1 | ||||||||
Common Name | OsJ_07517 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | AP2 | ||||||||
Protein Properties | Length: 701aa MW: 73182.9 Da PI: 6.8005 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33.2 | 1.3e-10 | 302 | 358 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +++Aa+a++ a++k++g LOC_Os02g40070.1 302 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 358 57*******************5444.2455535555.7799999*************98 PP | |||||||
2 | AP2 | 49.7 | 9e-16 | 401 | 452 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g LOC_Os02g40070.1 401 SKYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 452 89****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.8E-8 | 302 | 358 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.40E-17 | 302 | 368 | No hit | No description |
SuperFamily | SSF54171 | 3.33E-14 | 302 | 368 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.8E-22 | 303 | 372 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.108 | 303 | 366 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-11 | 303 | 367 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-6 | 304 | 315 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-10 | 401 | 452 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.87E-23 | 401 | 462 | No hit | No description |
SuperFamily | SSF54171 | 5.75E-18 | 401 | 462 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.1E-34 | 402 | 466 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.467 | 402 | 460 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-18 | 402 | 461 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-6 | 442 | 462 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 701 aa Download sequence Send to blast |
MASANNWLGF SLSGQENPQP HQDSSPPAAI DVSGAGDFYG LPTSQPTAAD AHLGVAGHHH 60 NASYGIMEAF NRGAQEAQDW NMRGLDYNGG ASELSMLVGS SGGKRAAAVE ETEPKLEDFL 120 GGNSFVSEQD HHAAGGFLFS GVPMASSTNS NSGSNTMELS MIKTWLRNNG QVPAGHQPQQ 180 QQPAAAAAAA QQQAHEAAEM STDASASSFG CSSDAMGRSN NGGAVSAAAG GTSSQSLALS 240 MSTGSHSHLP IVVAGGGNAS GGAAESTSSE NKRASGAMDS PGGGAIEAVP RKSIDTFGQR 300 TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ SRKGRQGGYD KEDKAARAYD LAALKYWGTT 360 TTTNFPISNY EKELDEMKHM TRQEYIAYLR RNSSGFSRGA SKYRGVTRHH QHGRWQARIG 420 RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFD MSRYDVKSIL ESSTLPVGGA 480 ARRLKEAADH AEAAGATIWR AADMDGAGVI SGLADVGMGA YAASYHHHHH HGWPTIAFQQ 540 PPPLAVHYPY GQAPAAPSRG WCKPEQDAAV AAAAHSLQDL QQLHLGSAAA HNFFQASSSS 600 TVYNGGGGGY QGLGGNAFLM PASTVVADQG HSSTATNHGN TCSYGNEEQG KLIGYDAMAM 660 ASGAAGGGYQ LSQGSASTVS IARANGYSAN WSSPFNGAMG * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.49859 | 0.0 | callus| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37988733 | 0.0 | ||||
Expression Atlas | A3A915 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g40070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g40070 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK112070 | 0.0 | AK112070.1 Oryza sativa Japonica Group cDNA clone:001-120-D07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623974.1 | 0.0 | AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A2X767 | 0.0 | A2X767_ORYSI; Uncharacterized protein | ||||
TrEMBL | A3A915 | 0.0 | A3A915_ORYSJ; Uncharacterized protein | ||||
STRING | ORUFI02G25430.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1569 | 37 | 110 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 1e-121 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g40070.1 |