PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g39710.1
Common NameLOC4329950, OJ1476_F05.18, Os02g0610500, OSNPB_020610500
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family CO-like
Protein Properties Length: 333aa    MW: 34952.9 Da    PI: 4.9272
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g39710.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.31.6e-083067438
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                      r C+ ++ + ++l+C+ ++ +lC+ C    H g    H 
  LOC_Os02g39710.1 30 RACDSCGGEAARLYCRADGAFLCARCDARAH-GagsrHA 67
                      57**************************999.4466675 PP
2zf-B_box22.91.8e-0769113341
          zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                        + C+ +e+ ++   C+ +   lC+ C   +H+       H++ p
  LOC_Os02g39710.1  69 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERLP 113
                       679*****************************6688888898877 PP
3CCT70.44.5e-24261304144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       Rea+l+RY+eKrk+R+F+K+irY+sRKa+Ae+RpR+KGrF+k++
  LOC_Os02g39710.1 261 REARLMRYREKRKNRRFDKTIRYASRKAYAETRPRIKGRFAKRT 304
                       9****************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.8932771IPR000315B-box-type zinc finger
SMARTSM003365.4E-92771IPR000315B-box-type zinc finger
CDDcd000219.51E-103071No hitNo description
PfamPF006439.0E-73167IPR000315B-box-type zinc finger
PROSITE profilePS5011910.42467114IPR000315B-box-type zinc finger
PfamPF006437.9E-669114IPR000315B-box-type zinc finger
SMARTSM003364.6E-972114IPR000315B-box-type zinc finger
PfamPF062032.7E-18261303IPR010402CCT domain
PROSITE profilePS5101716.916261303IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEAVEDKAMV GVGGAVAAGY SSSSWGLGTR ACDSCGGEAA RLYCRADGAF LCARCDARAH  60
GAGSRHARVW LCEVCEHAPA AVTCRADAAA LCAACDADIH SANPLARRHE RLPVAPFFGP  120
LADAPQPFPF SQAAADAAAA REEDADDDRS NEAEAASWLL PEPDDNSHED SAAAADAFFA  180
DTGAYLGVDL DFARSMDGIK AIGVPVAPPE LDLTAGSLFY PEHSMAHSLS SSEVAIVPDA  240
LSAGSAAPPM VVVVASKGKE REARLMRYRE KRKNRRFDKT IRYASRKAYA ETRPRIKGRF  300
AKRTADADDD DEAPCSPAFS ALAASDGVVP SF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.157570.0flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329685540.0
Expression AtlasQ6K9C5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g39710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g39710
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1000970.0AK100097.1 Oryza sativa Japonica Group cDNA clone:J023004D12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625855.10.0zinc finger protein CONSTANS-LIKE 3
TrEMBLA0A0E0NHM50.0A0A0E0NHM5_ORYRU; Uncharacterized protein
TrEMBLQ6K9C50.0Q6K9C5_ORYSJ; Os02g0610500 protein
STRINGORUFI02G25130.10.0(Oryza rufipogon)
STRINGOS02T0610500-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Representative plantOGRP6911767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.11e-41CONSTANS-like 3