PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g39520.1
Common NameLOC4329933, Os02g0608100, OSJNBa0030C08.28, OSNPB_020608100, P0496E03.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 854aa    MW: 97104 Da    PI: 6.5486
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g39520.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.81.7e-1394175188
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                       k+Y++YA + GFs  + ks++  ++g + +  + Cs+ g+ + +         +r++t+++C a++ +k+++d   ++++ +l+HnH+
  LOC_Os02g39520.1  94 KYYKQYAADSGFSAIILKSSYL-KSGVCRRLVLGCSRAGRGRANACY-----LSRESTKINCPARISLKLRQDRWLHIDDAKLDHNHP 175
                       69*************9999998.7888***************99998.....999****************99999***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.5E-1194175IPR004330FAR1 DNA binding domain
PfamPF105512.7E-23281374IPR018289MULE transposase domain
PROSITE profilePS509669.446568605IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-7577601IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-4580607IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001059developmental stageJ bicellular pollen stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
MVEGLPAELP IVDVAARLDG KSSELPENGA LLKGAEESQD LGGNPVAVLT LHEGKEVILV  60
DDNDSEQEDG GSGKVDENAP RVGLRFKTYD DALKYYKQYA ADSGFSAIIL KSSYLKSGVC  120
RRLVLGCSRA GRGRANACYL SRESTKINCP ARISLKLRQD RWLHIDDAKL DHNHPPNQSS  180
VSHMNCYKKL TDAKNEETAS RSKGRRNVPI GDKEQGSFTE IGRLKFGEGD DEYIHKFFGS  240
MQNKNPNFFY LVDLDKQGRL RNLFWSDARS QAAHDYYGRD VIYFDTSYLT EKYDLPLVFF  300
TGVNNHGQPV LFGTGLLSDL GVDSYVWLFR AFFACMKGCY PDAIITEHYN AILDAVRDVL  360
PQVKHRLCLY RIMKDVAENL KAHAEFKTIK KALKKVTYGS LKASEFEADW KKIILEHGLG  420
ENECLSSLYE HRQLWAPAYL KGQFWAGMSV SQRGESIVSY YDGFVYPKTS LKQFFSKYEI  480
ILENKYKKEL QADEESSHRT PLTVTKFYME EQLAKEYTIN MFKKFQDELK ATMYCDGMPT  540
KVDGQFVTFV VKECSYMEDG KEKEGRNYEV YFCKQELVNC ECECGFFQFT GILCRHILSV  600
FKLQEMFEIP IRFVLDRWKR DYKKLHADAL CKNDEMLPDV LPDGIIERHD ILFTQSRQVL  660
NLGFISEGRY LVALKLLRQA EKTLLDDGDR GRQAGLLSFE AEAPENDEGI FSPEFSEGVK  720
NSQSTNAKRR GRPTKKLIES DSDTVLRPNK EQDFLRSSFV TDESNMIQGA PSASHLESPH  780
LGVDLMEGIP PNLSFNHHFG MDVNHQHQVP NQPRMLPSNF LQAQADSQGY GNQWAFPTLQ  840
DNSMLRTAAR RGV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.743360.0callus| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379889420.0
Expression AtlasQ6K1Y4-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g39520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g39520
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1193190.0AK119319.1 Oryza sativa Japonica Group cDNA clone:001-130-H08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626730.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLQ6K1Y40.0Q6K1Y4_ORYSJ; Os02g0608100 protein
STRINGOS02T0608100-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1458844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-118FAR1-related sequence 6