PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g39220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 1542aa MW: 175336 Da PI: 8.167 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 75.1 | 1.5e-23 | 726 | 816 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 fYn+YAke GFsvrk++ ++ + +t+r+++Cs+eg+r+e + ++++r+++a tr+gC+a +++k++k +g w v k + +HnH+la LOC_Os02g39220.1 726 FYNRYAKEKGFSVRKNYIRRDPITVAVTHRQYQCSREGHRKEVYMEaANRSREPKALTRCGCNALFEIKLDKkKGDWFVVKYVAKHNHPLA 816 9****************************************998876789999******************99****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47954 | 4.33E-20 | 91 | 237 | IPR013763 | Cyclin-like |
Pfam | PF00134 | 2.2E-16 | 116 | 237 | IPR006671 | Cyclin, N-terminal |
Gene3D | G3DSA:1.10.472.10 | 4.6E-15 | 126 | 231 | IPR013763 | Cyclin-like |
CDD | cd00043 | 6.44E-8 | 135 | 230 | No hit | No description |
SMART | SM00385 | 2.9E-4 | 140 | 231 | IPR013763 | Cyclin-like |
Gene3D | G3DSA:1.10.472.10 | 4.7E-18 | 232 | 316 | IPR013763 | Cyclin-like |
Pfam | PF02984 | 4.3E-11 | 240 | 316 | IPR004367 | Cyclin, C-terminal domain |
SMART | SM01332 | 8.0E-15 | 240 | 352 | IPR004367 | Cyclin, C-terminal domain |
CDD | cd00043 | 2.94E-6 | 240 | 317 | No hit | No description |
SuperFamily | SSF47954 | 1.53E-11 | 241 | 316 | IPR013763 | Cyclin-like |
SMART | SM00385 | 0.24 | 244 | 355 | IPR013763 | Cyclin-like |
Pfam | PF03101 | 7.5E-22 | 726 | 816 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.7E-34 | 938 | 1032 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.878 | 1203 | 1254 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0066 | 1229 | 1256 | IPR006564 | Zinc finger, PMZ-type |
SuperFamily | SSF54001 | 4.32E-8 | 1422 | 1478 | No hit | No description |
Gene3D | G3DSA:3.30.310.130 | 1.9E-6 | 1438 | 1475 | No hit | No description |
Pfam | PF02902 | 2.3E-4 | 1440 | 1479 | IPR003653 | Ulp1 protease family, C-terminal catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006508 | Biological Process | proteolysis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008234 | Molecular Function | cysteine-type peptidase activity | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1542 aa Download sequence Send to blast |
MFGPYSGGGG VPLPQMDADT YVRTIAAMPP HPLAPPPDSP RTPHTYVGFL PVFGDLPPLT 60 GAVLQEPVPV PPEQRADQPV AVATENSAPT RPQLCAPYDD EVEATLRAME TNPAERPSPY 120 FLETTQGGRM SALVRASMIA FMGEFSRKNK LADGTLQRAA YFLDRYLSVT PESDDALQLR 180 LVGATAVFLA AKYEDQYTLR KIDASMVAAR CGYTSETRHK MVSIMETEML AALGFNLGGP 240 TAYTFVEHFT RYYGDGEEEK QLKEAAHRVA DGTLLTYGFH RYLPSMVAAS SIFLARLHEL 300 GHEPWSNDLA ELTAFSTLIS LQLWPNRGFV EHFTRYNSRG EEELRVQRLE RDIADQSLMN 360 YGCPRATCRP WRRRPAASIF IARCSLNRPD RSGLWSTELQ ELTGLQGAVI RKKQAHLVCP 420 VRSSYCAMRG RARSHRRRLA VPRSHRMDQP RTVEPPSSHR RRRLATPRKQ SPPPPPPSTK 480 SPRFAAARGR PTCEAVVVVR GDAEADDPMG GDGAGGAIGS VDEGDSVAGG EADGGDPGWL 540 RRVSLSTRAS GRLNVSARAL PSAGHVRAGV TAASRCSGPL HRRSRRALLD PATAAPDLPP 600 PSRETSLPPL TDTGERHLPR RRHRRSPVDF ADNDERTLDC TGIATAGDVV CGEHDHDARD 660 TGELVAALAG LGEDDEHLRG AGRVGSGERT CMGDEMGDNF ISLEEQEEYR TMTAMRFKTE 720 KEGFLFYNRY AKEKGFSVRK NYIRRDPITV AVTHRQYQCS REGHRKEVYM EAANRSREPK 780 ALTRCGCNAL FEIKLDKKKG DWFVVKYVAK HNHPLAKSDE VAFLRSHRTI SNAQKANILE 840 LKEVGLRQHQ VMDVMERHHG GFDATGFVSR DLYNYFTRLR KKHILGGDAE RVIKYFQWRQ 900 KHDMEFFFEY ETDEAGRLKR LFWSDPQSRI DYDAFGDVVV FDSTYRVNRY NLPFIPFVGV 960 NHHGSTIIFG CAIVADEKVA TYEWILKQFL DCMYQKHPRA LITDGDNAMR RAIAAVMPDS 1020 EHWLCTWHIE QNMARHLRPD MLSDFRTLVH APYDHEEFER KWVEFKVKHK GCEDNQWLVR 1080 MYNLRKKWAT AYTKGLFFLG MKSNQRSESL NSKLHRYLDR KMSLVLLVEH YEHCLSRMRY 1140 REAELDCKAS QSIPFTSNDA SFIEKDAARI FTPAVFKKLK LVIAKSMDWE VIDCIEEDNL 1200 VKYVISMKGD SEMLQILNCT YVESTMKSIN CTCRKMDREC LPCEHMVAIM HHLKLDAIPE 1260 ACIVRRWTIK AKHMFPSDRY GEVYTWSNQM ERYHRLRSMG TEVFFKCSVS KETTLMVMEM 1320 LEKLDLETDE CETKNSDLSL CGHVLAQSLR TDIESHDKVH DPMEIVPKGA PTKRLRGFME 1380 KRVRRCGIAE APHIIESDDD SLFEKNMVDT IGARLRRPHG RVIDAYIMLI KDMQVKVQES 1440 MIFLPLNRNS THWYVAVLNG AKEKIQILDS MRMEKSYYDK DKDLNNTHWN GKELSPEFNE 1500 MDTTTTFKHK VVANLINSTM NEVIEVQQDI KRLVTEANVG N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jgz_B | 1e-13 | 95 | 337 | 1 | 236 | G2/MITOTIC-SPECIFIC CYCLIN-B1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g39220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g39220 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004111 | 0.0 | AP004111.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1058_F07. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | Q6K8S4 | 0.0 | Q6K8S4_ORYSJ; Putative far-red impaired response protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 9e-96 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g39220.1 |