PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g39140.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 301aa    MW: 30722.1 Da    PI: 8.3766
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g39140.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12236281655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR ri +++ +L+el+P+     +k  s a++L +Ave+Ik Lq
  LOC_Os02g39140.1 236 SIAERERRTRISEKLRKLQELVPNM----DKQTSTADMLDLAVEHIKGLQ 281
                       689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.723230280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-16233295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.55E-12234285No hitNo description
Gene3DG3DSA:4.10.280.106.3E-15235293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13236286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-10236281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MMRRFLPVGG GGGGGVEPSS SSTTPQRGEA EAAGLRFGGG DISLGPHGGG GGGGGGGGGH  60
GHQLQDGSVD LLARHSSSPA GFFSNLMASN GFPGSKGGGG SGAEAHHHPS MAGSGSGSSS  120
GGRKMKSQLS FTAGPPHLSH IAEDGAFPDR AGAEASVPRT FSAGGSSGGG GFSIVGPWEE  180
SRDIISTLGG YESQFGGMAS TSALEMAGMD RYLQLQHDQV PFKVRAKRGC ATHPRSIAER  240
ERRTRISEKL RKLQELVPNM DKQTSTADML DLAVEHIKGL QSQLQALKHE QEKCTCCSRP  300
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.493370.0leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329960420.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g39140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g39140
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1108330.0AK110833.1 Oryza sativa Japonica Group cDNA clone:002-172-A09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625725.10.0transcription factor bHLH128 isoform X1
SwissprotQ8H1028e-56BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A0E0NHG90.0A0A0E0NHG9_ORYRU; Uncharacterized protein
STRINGORUFI02G24640.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115313141
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-47bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]