PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g38470.1 | ||||||||
Common Name | LOC4329874, OJ1212_D02.14, Os02g0598200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | B3 | ||||||||
Protein Properties | Length: 1049aa MW: 118379 Da PI: 9.3334 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.2 | 1.8e-10 | 983 | 1042 | 33 | 95 |
-SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++l+d+ r W v + k+ + +t+GWk F+ an+L++gD++ F + +e el ++ LOC_Os02g38470.1 983 RNVVILKDPMRRLWPVFY--HDKPVFVGFTAGWKPFAAANNLQAGDVCKFVKEM-DEDELAFQ 1042 34799*************..9***9*************************9443.44444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.489 | 375 | 468 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.92E-16 | 377 | 470 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 6.0E-4 | 378 | 468 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.9E-14 | 378 | 468 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.23E-7 | 390 | 465 | No hit | No description |
SMART | SM01019 | 0.0046 | 955 | 1047 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.59E-13 | 956 | 1047 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.2E-13 | 956 | 1047 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.32E-14 | 961 | 1047 | No hit | No description |
Pfam | PF02362 | 9.4E-8 | 965 | 1044 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.278 | 986 | 1048 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001015 | developmental stage | K second mitotic division stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 1049 aa Download sequence Send to blast |
MDGAVRGQGC VGRLRSFNKT KKKNRNCSDD MRNGDDEEKK YSHHDMKNNL RNDANEEKRK 60 SSDDMRDGDF EEKKKCSRHD MKKNLRNDAN EEKRKSSDDM RDGDDEEKKC SRQDMKKNLR 120 NDADEEKRKS SDDMRDGDDE EKKKRSRHDM KKNSRNDADE EKRKRKRKCS DDLKKSVVND 180 ASKEATSHSD WRKNRKAGSD AEQRGKKLLN GDKKAKSRKV TTPFFEKMRK IKMQRTSNQN 240 GEKNMKSDGD SYKKTVPLSV NKGKMEKDGT NKRTLSNTLV AKERKMRPSD SMEMKMKKKK 300 RDASFVQPDE RTAQTFSTKN KEKKRKAPST PLKREQKERV ASSDNKKETK KACIVAIGNE 360 KKNCRDGKKK KRKAAFAFFK FVRDEFEELL FIPPAVAPSL KDLIDRHVYL EDSEGKCSKI 420 RLSVVDGSLA FYEGWNSFVS EHCIKWGEFL LFEYTPESTF SVRVFGIDSC ERLHFSVKSG 480 GKGAVKKRKE RHTLSDDLIS HYNGQYQDSE DIHDGPNVSG ESPRSKEPKI TVDAEIGTRN 540 LVAKSINAAS ETQDSERVES GIGYGSLGAL GNKVRNLSNG ECDTRSDSVF CIQEKTRRSE 600 VIIISDEAYS TQVDEDTMKQ TAPSEASEIH HVTINTQKDL ERVVDGVCCE SSVALNNKMG 660 NLILGEPKNK NISPACSTEK TNGSEITPTT GVIPLTQENI DTVKLNTLSC FEEDRSTTRE 720 SELAAAIPTT SETHDSDKDL GQKHQRNSVQ VNSIIAVDKY PNDSEMNISG NIFRIYEAPA 780 GTRCLEKWKR GIVNGRAALD DIGQVRPEKT QKAGEKLVGN CGAMGESPVD LRIESDVTDT 840 CLKPILNIPI EELSILDSVS ISKCGRSRTE VNHLFNQKGA TVQLQTKKEP LKPTGSSGNR 900 KGDKIAVSVN RVFAHQSELQ IPQQENGNFT SCVTPVALLP AKAELLDLDD HSLQFCIPST 960 IQKWLELPKS LPITCRQKGR YDRNVVILKD PMRRLWPVFY HDKPVFVGFT AGWKPFAAAN 1020 NLQAGDVCKF VKEMDEDELA FQVYITRK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 164 | KKRSRHDMKKNSRNDADEEKRKR |
2 | 161 | 167 | KRKRKRK |
3 | 162 | 167 | RKRKRK |
4 | 367 | 372 | KKKKRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.50593 | 0.0 | callus |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37991613 | 0.0 | ||||
Expression Atlas | Q6K5K2 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g38470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g38470 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121990 | 0.0 | AK121990.1 Oryza sativa Japonica Group cDNA clone:J033109I02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624189.1 | 0.0 | B3 domain-containing protein Os02g0598200 | ||||
Refseq | XP_015624190.1 | 0.0 | B3 domain-containing protein Os02g0598200 | ||||
Swissprot | Q6K5K2 | 0.0 | Y2982_ORYSJ; B3 domain-containing protein Os02g0598200 | ||||
TrEMBL | A3A8P4 | 0.0 | A3A8P4_ORYSJ; Uncharacterized protein | ||||
STRING | OS02T0598200-02 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12272 | 27 | 30 | Representative plant | OGRP14587 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18960.1 | 2e-11 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g38470.1 |
Entrez Gene | 4329874 |
Publications ? help Back to Top | |||
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