PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g38090.1
Common NameLOC4329849, OJ1067_B01.18, OJ1126_D09.5, Os02g0594300, OSNPB_020594300
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 346aa    MW: 35945.6 Da    PI: 7.5738
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g38090.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.7e-1757107155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       ++y+GVr+++ +gr++AeIrdp     +  r +lg+f+tae+Aa a++ a+++++g
  LOC_Os02g38090.1  57 TRYRGVRRRP-WGRFAAEIRDPA----SkERRWLGTFDTAEQAACAYDVAARAMRG 107
                       68********.**********83....25999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-1057107IPR001471AP2/ERF domain
CDDcd000183.09E-2758116No hitNo description
SuperFamilySSF541711.05E-2158116IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-3058115IPR001471AP2/ERF domain
SMARTSM003801.6E-3458121IPR001471AP2/ERF domain
PROSITE profilePS5103223.18258115IPR001471AP2/ERF domain
PRINTSPR003673.8E-95970IPR001471AP2/ERF domain
PRINTSPR003673.8E-98197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MQAQQAMDEP ANAQLYGHAH AHSHHHRSKR PSPGGGGGGA ATLGADGGGG GGSLSGTRYR  60
GVRRRPWGRF AAEIRDPASK ERRWLGTFDT AEQAACAYDV AARAMRGTRA RTNFPVPAAA  120
GFPGGGGGGC WPWVNIPPQG AAAAASHQQP LNTLLLHNLL MSSSPHGCLL LHHAGHGHGH  180
AHSHSHSHSR AHNPSTRPPT SAPPPPPPAA ASSATTAPAT TTGAAATSAP GADDDAWGFL  240
LRREPPEAGL LQDVLHGFYP TRRPHDDAGP APKLERPYEA TSSYRVSSPW GAVEDCDDGD  300
GDGDDDYRGF PMMPQGLLED VIQCPPYMEV LAAPSAAVGR VSRRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2055121269ATERF1
3gcc_A4e-2055121269ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154470500.0
Expression AtlasQ6ZH77-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g38090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g38090
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040230.0AP004023.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1126_D09.
GenBankAP0040790.0AP004079.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1067_B01.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624483.10.0ethylene-responsive transcription factor ABI4
TrEMBLA2X6P90.0A2X6P9_ORYSI; Uncharacterized protein
TrEMBLQ6ZH770.0Q6ZH77_ORYSJ; Enhancer of shoot regeneration ESR1-like protein
STRINGOS02T0594300-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72633050
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.12e-12ERF family protein