PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g35660.1
Common NameLOC4329698, Os02g0564700, OsJ_07173, OSNPB_020564700, P0020C11.18
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 525aa    MW: 54719.1 Da    PI: 5.1029
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g35660.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-12325370555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h+++Er RR++i +++  L+el+P++      K +Ka++L + ++Y+k Lq
  LOC_Os02g35660.1 325 HSIAERLRREKISDRMKDLQELVPNS-----NKTNKASMLDEIIDYVKFLQ 370
                       99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.04E-13318374No hitNo description
SuperFamilySSF474593.79E-17318381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.06320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-17322380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9325370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-13326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001059developmental stageJ bicellular pollen stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MGGFAYPFTP SPAWSRDAVF AGSPWAAGGV SSLADALVSY GAVDDEEAAF LGKTAASSPS  60
TARLHEQQQL LLEAELLRHG DGLGFAAMDD DGGAAMLGAL EPCAMPLTDS GGPPVICSSS  120
SNDSSGSEHS AAMPAGGGFL VGEQQQHVPP AAYAAGGVLP SMAAGEETPQ SFGFGSLFNG  180
DLLQEATVSK YHHHQQQQQL GVVPSSQPHH LNDDIDFNTG KLMSFASGQQ HVTPSIDSLQ  240
IDQKEFSSGL HHLNLSSLIS GPLASFNATQ SHRQPAEACG GKNGGAAPFV NLSEVLPKGN  300
GSGSAGNGAP KPRVRARRGQ ATDPHSIAER LRREKISDRM KDLQELVPNS NKTNKASMLD  360
EIIDYVKFLQ LQVKVLSMSR LGAAEAVVPL LTETQTESPG FLLSPRSSSG ERQAGAGAVT  420
GGLPGDQPEL LDGGAMFEQE VVKLMEDNMT TAMQYLQSKG LCLMPVALAS AISAQKGTSS  480
AAVRPEKKKN GDGDGGGDEE DVKGEFDAPR RPPVGRPKEM RSRV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.593030.0leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2975994460.0
Expression AtlasQ6Z7E7-
Function -- GeneRIF ? help Back to Top
  1. The chemistry and physiological expression of PTF1 in phosphte-starved O. sativa are reported.
    [PMID: 16006597]
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g35660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g35660
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419240.0AK241924.1 Oryza sativa Japonica Group cDNA, clone: J075076G04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623831.10.0transcription factor bHLH68
TrEMBLQ6Z7E70.0Q6Z7E7_ORYSJ; Os02g0564700 protein
STRINGOS02T0564700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.17e-56LJRHL1-like 3
Publications ? help Back to Top
  1. Yi K, et al.
    OsPTF1, a novel transcription factor involved in tolerance to phosphate starvation in rice.
    Plant Physiol., 2005. 138(4): p. 2087-96
    [PMID:16006597]