PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g35240.1
Common NameOSJNBb0038F20.20
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 171aa    MW: 18048.2 Da    PI: 5.3043
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g35240.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.8e-19959155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++y+GVr++k +g+Wv+eIr p   g + r++lg+f++ae+Aa a++ a+++l+g
  LOC_Os02g35240.1  9 PQYRGVRRRK-WGKWVSEIRQP---GTKVRIWLGSFDSAEMAAVAHDVAALRLRG 59
                      68*****998.**********8...325*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.75E-29968No hitNo description
PfamPF008473.4E-12959IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-291068IPR001471AP2/ERF domain
SMARTSM003802.0E-331074IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-201069IPR016177DNA-binding domain
PROSITE profilePS5103223.6831068IPR001471AP2/ERF domain
PRINTSPR003677.5E-101122IPR001471AP2/ERF domain
PRINTSPR003677.5E-103349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MAAGGGGGPQ YRGVRRRKWG KWVSEIRQPG TKVRIWLGSF DSAEMAAVAH DVAALRLRGR  60
DGAQLNFPGS VGWLPQPATT DPVDIRAAAA EAAERVRREP ALVSAAASAA PRRLELGGGD  120
GEFDEMESPR LWAEMAEAML LDPPKWGPDG SDGADGSSQS WAHGSLWDGC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-15872367ATERF1
3gcc_A4e-15872367ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6YVX0
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g35240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g35240
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0058080.0AP005808.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0038F20.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624476.11e-114ethylene-responsive transcription factor ERF027, partial
SwissprotQ8LBQ78e-29ERF34_ARATH; Ethylene-responsive transcription factor ERF034
SwissprotQ9C9I24e-29ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLQ6YVX01e-116Q6YVX0_ORYSJ; Putative AP2 domain-containing protein
STRINGOGLUM02G20980.11e-116(Oryza glumipatula)
STRINGORUFI02G21740.11e-116(Oryza rufipogon)
STRINGOS02T0558700-001e-116(Oryza sativa)
STRINGONIVA02G22690.11e-116(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.18e-16ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]