PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g34630.2
Common NameOJ1004_H01.10, Os02g0551400, OSNPB_020551400
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 666aa    MW: 70142.1 Da    PI: 10.1189
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g34630.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.99.4e-08168212244
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                       ++W+ eEd  l  +v+++G g+W  I ++      Rt  q++ rw
  LOC_Os02g34630.2 168 KPWSREEDMELGAGVQKHGEGNWMEILHKYKfdSSRTHLQLQQRW 212
                       68******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.555162220IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-11162219IPR009057Homeodomain-like
SMARTSM007172.4E-6166218IPR001005SANT/Myb domain
PfamPF002493.2E-6168212IPR001005SANT/Myb domain
SuperFamilySSF466896.13E-13169228IPR009057Homeodomain-like
CDDcd116606.24E-18170217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000784Cellular Componentnuclear chromosome, telomeric region
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MLQEMGKQVG AGKGIDWRAL VRRTSTGITS AREYQMLWRH LAYGHEFVES VEPASLPLDD  60
GSDLECEIEI VPAPGNEALA EATSFAKTII TGSSREQTSG QRVNSEAAAL NTPNEKIVRV  120
PSDKQLVPGH RLTNGTGPVS SSKQPSHTGS SPDPLDPNGH PKKKKKPKPW SREEDMELGA  180
GVQKHGEGNW MEILHKYKFD SSRTHLQLQQ RWALICKRQG STKPATPKIP NVMSEELKAA  240
QKAFSLAIGT TRSSTLRPGG VPHHNPMVTT TNPEVKSVTA PSPLPVPVHV VPVPVPVQPV  300
QVQLPPPQLH QAPAQSAPPP PKVSNASNKS RNNSKKQVAQ SIPVNGPLSI QEAALAAGGR  360
IAEPSVATNF LKAAQSTKAV HIRSRGTGSS KSSTGSKTPT VAGEPGTQLG SDQHLELQST  420
GGPSQVLTAH ATEQVHNVSE VAGVNPLGQS AGVHLSETKK ALNTTPVSGS SDKMEIDDNS  480
NYFAVTMEDL FPEDVKQEDV QDPKIEEAID PKDADMLEFD RFVAQGCLNK DNVDKSKAAK  540
IAPEAQSVIG SQKKQLKTLP TVGKSNPVFA GPPATAKKTK APVPQGGMSS GIVGVLNRSL  600
GGKAPAPATT GTQSTVQKQQ SMSSKGNLLV PKNVAPGTVT PANNRANTAV NGASKVNPPA  660
SQKPA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160166PKKKKKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.149850.0callus| flower| leaf| panicle| root| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329784660.0
Expression AtlasQ6ZI39-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g34630.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g34630
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4289000.0AJ428900.1 Oryza sativa partial mRNA for putative Myb-family transcription factor (myb-L1 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627404.10.0uncharacterized protein LOC4329631
TrEMBLQ6ZI390.0Q6ZI39_ORYSJ; Myb-family transcription factor-like protein
STRINGOS02T0551400-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.11e-32MYB_related family protein