PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g34520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 179aa MW: 20137.1 Da PI: 7.2206 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 24.9 | 6.5e-08 | 68 | 103 | 1 | 38 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCske 38 +fY+ YA++vGFs+r+ ++kk +g + + f C ++ LOC_Os02g34520.1 68 EFYECYAHRVGFSIRIGQHKKV--DGVVLYKCFLCANN 103 6*****************9998..9**********875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.5E-5 | 68 | 102 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MARRLEFDDV HSDAESVTTG VPHRRAQYIK PQKSTSIPFC GSYFVPECDD SVVPHIGMTF 60 TDVESAKEFY ECYAHRVGFS IRIGQHKKVD GVVLYKCFLC ANNSLLRFGI GHDGHPLSVL 120 DLAMELYHCE KETIKRDFTN SVLKNLFAGK DFLWCCKPPK GHSVNLLRDI PVEGFGYS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g34520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g34520 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004775 | 1e-100 | AP004775.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0451A10. | |||
GenBank | AP005469 | 1e-100 | AP005469.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0040I22. | |||
GenBank | AP014958 | 1e-100 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640678.1 | 2e-49 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A0E0G7Y4 | 3e-92 | A0A0E0G7Y4_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA02G21900.1 | 5e-93 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15006 | 9 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18960.1 | 4e-09 | FAR1-related sequence 12 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g34520.1 |