PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g34320.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 311aa    MW: 31814.8 Da    PI: 5.8205
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g34320.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.8e-1392141255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r+h  +Er RR++i++ f  Lr+l+P++      K +Ka+i+ +A+ +I+sL+
  LOC_Os02g34320.1  92 ERMHIFAERERRRKIKNMFTDLRDLVPSL----TNKADKATIVGEAISFIRSLE 141
                       578999**********************9....68*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-1687154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-1389145No hitNo description
PROSITE profilePS5088814.91990140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-1093141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-1694154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-1196146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550214.2E-5236288No hitNo description
PROSITE profilePS516719.338239310IPR002912ACT domain
CDDcd048730.00288240301No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAQEGTSSNA PPAAASMGSG DGDNKEGTGE SGNNQLLLPA IAASADKGKG VVAGTGNVDA  60
KGKTTAMAPA ASSTNAPNNQ GGGGGGGGRS RERMHIFAER ERRRKIKNMF TDLRDLVPSL  120
TNKADKATIV GEAISFIRSL EETVADLERR KRERNSLAAR CARLGLGGSS SSSAPPPPPP  180
PAAADDTAAV MPPAPAVPPP DAAAVTAGPE PAPAPAPGTL MVWSGPSVVL NLCGGDQAFI  240
NVSVARRPGV LTMIVDVLER HSIDVVTAQI ASDLSRSLFT IHTSVDRERG MFMDTATAEE  300
IYQLAVSEIM *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g34320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g34320
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056110.0AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878857.10.0transcription factor bHLH95
TrEMBLB8AJC80.0B8AJC8_ORYSI; Uncharacterized protein
STRINGORUFI02G21070.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Representative plantOGRP12261548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-16bHLH family protein